Results: Wilcoxon-Rank-Sum Wilcoxon-median t-test t-test-mean mean1 (std) mean2 (std) median1 median2 ######Matthews###### --->fabia-------beagle1--: 8.95e-16 0.654031 3.43e-30 0.568479 0.621894 (0.342423) 0.053416 (0.061641) 0.754451 0.044709 --->fabia-------beagle2--: 1.33e-16 0.600403 6.46e-28 0.549234 0.621894 (0.342423) 0.072661 (0.107639) 0.754451 -0.002052 --->fabia-------plink----: 1.06e-01 0.093355 6.43e-01 0.015495 0.621894 (0.342423) 0.606399 (0.078364) 0.754451 0.602882 --->fabia-------germline1: 3.13e-15 0.688154 1.11e-31 0.591167 0.621894 (0.342423) 0.030727 (0.011679) 0.754451 0.031913 --->fabia-------germline2: 2.44e-15 0.695842 6.46e-32 0.595763 0.621894 (0.342423) 0.026132 (0.019231) 0.754451 0.027260 --->fabia-------dash-----: 3.13e-15 0.714081 5.46e-33 0.616172 0.621894 (0.342423) 0.005722 (0.001320) 0.754451 0.005849 --->beagle1-----beagle2--: 9.17e-03 -0.006974 1.61e-02 -0.019245 0.053416 (0.061641) 0.072661 (0.107639) 0.044709 -0.002052 --->beagle1-----plink----: 3.96e-18 -0.556281 3.42e-76 -0.552984 0.053416 (0.061641) 0.606399 (0.078364) 0.044709 0.602882 --->beagle1-----germline1: 1.07e-02 0.018195 3.68e-04 0.022689 0.053416 (0.061641) 0.030727 (0.011679) 0.044709 0.031913 --->beagle1-----germline2: 6.6e-04 0.023719 3.54e-05 0.027284 0.053416 (0.061641) 0.026132 (0.019231) 0.044709 0.027260 --->beagle1-----dash-----: 1.87e-09 0.042798 8.37e-12 0.047693 0.053416 (0.061641) 0.005722 (0.001320) 0.044709 0.005849 --->beagle2-----plink----: 3.96e-18 -0.540706 1.1e-61 -0.533739 0.072661 (0.107639) 0.606399 (0.078364) -0.002052 0.602882 --->beagle2-----germline1: 8.97e-02 0.035036 1.74e-04 0.041934 0.072661 (0.107639) 0.030727 (0.011679) -0.002052 0.031913 --->beagle2-----germline2: 6.92e-02 0.034521 4.17e-05 0.046529 0.072661 (0.107639) 0.026132 (0.019231) -0.002052 0.027260 --->beagle2-----dash-----: 2.89e-02 0.060994 1.19e-08 0.066939 0.072661 (0.107639) 0.005722 (0.001320) -0.002052 0.005849 --->plink-------germline1: 3.96e-18 0.573006 4.39e-87 0.575672 0.606399 (0.078364) 0.030727 (0.011679) 0.602882 0.031913 --->plink-------germline2: 3.96e-18 0.576956 1.96e-86 0.580268 0.606399 (0.078364) 0.026132 (0.019231) 0.602882 0.027260 --->plink-------dash-----: 3.96e-18 0.597986 6.5e-90 0.600677 0.606399 (0.078364) 0.005722 (0.001320) 0.602882 0.005849 --->germline1---germline2: 5.31e-02 0.003575 8.66e-03 0.004595 0.030727 (0.011679) 0.026132 (0.019231) 0.031913 0.027260 --->germline1---dash-----: 5.19e-18 0.025604 7.65e-43 0.025005 0.030727 (0.011679) 0.005722 (0.001320) 0.031913 0.005849 --->germline2---dash-----: 4.17e-14 0.020673 7.21e-19 0.020409 0.026132 (0.019231) 0.005722 (0.001320) 0.027260 0.005849 ######F1###### --->fabia-------beagle1--: 1.55e-15 0.706102 4.56e-31 0.579210 0.604494 (0.342098) 0.025285 (0.026355) 0.725871 0.020056 --->fabia-------beagle2--: 3.56e-15 0.681545 2.17e-27 0.537571 0.604494 (0.342098) 0.066924 (0.098571) 0.725871 0.000000 --->fabia-------plink----: 9.1e-02 0.110452 1.04e-01 0.055377 0.604494 (0.342098) 0.549117 (0.092639) 0.725871 0.541681 --->fabia-------germline1: 3.13e-15 0.682962 4.52e-32 0.598647 0.604494 (0.342098) 0.005847 (0.001223) 0.725871 0.005883 --->fabia-------germline2: 3.13e-15 0.682359 4.87e-32 0.597945 0.604494 (0.342098) 0.006549 (0.002750) 0.725871 0.006644 --->fabia-------dash-----: 2.52e-01 0.073504 8.11e-01 -0.008230 0.604494 (0.342098) 0.612724 (0.011361) 0.725871 0.613127 --->beagle1-----beagle2--: 1.35e-04 -0.057358 3.24e-06 -0.041639 0.025285 (0.026355) 0.066924 (0.098571) 0.020056 0.000000 --->beagle1-----plink----: 3.96e-18 -0.520786 1.32e-75 -0.523832 0.025285 (0.026355) 0.549117 (0.092639) 0.020056 0.541681 --->beagle1-----germline1: 4.07e-09 0.017153 4.2e-11 0.019437 0.025285 (0.026355) 0.005847 (0.001223) 0.020056 0.005883 --->beagle1-----germline2: 6.68e-09 0.016681 1.63e-10 0.018735 0.025285 (0.026355) 0.006549 (0.002750) 0.020056 0.006644 --->beagle1-----dash-----: 3.96e-18 -0.588402 6.54e-133 -0.587440 0.025285 (0.026355) 0.612724 (0.011361) 0.020056 0.613127 --->beagle2-----plink----: 4.08e-18 -0.485044 5.03e-57 -0.482193 0.066924 (0.098571) 0.549117 (0.092639) 0.000000 0.541681 --->beagle2-----germline1: 2.65e-02 0.054746 1.3e-08 0.061076 0.066924 (0.098571) 0.005847 (0.001223) 0.000000 0.005883 --->beagle2-----germline2: 3.02e-02 0.053794 1.82e-08 0.060374 0.066924 (0.098571) 0.006549 (0.002750) 0.000000 0.006644 --->beagle2-----dash-----: 3.96e-18 -0.551768 1.14e-76 -0.545801 0.066924 (0.098571) 0.612724 (0.011361) 0.000000 0.613127 --->plink-------germline1: 3.96e-18 0.538155 1.22e-78 0.543270 0.549117 (0.092639) 0.005847 (0.001223) 0.541681 0.005883 --->plink-------germline2: 3.96e-18 0.537327 1.59e-78 0.542567 0.549117 (0.092639) 0.006549 (0.002750) 0.541681 0.006644 --->plink-------dash-----: 1e-08 -0.068475 1.06e-09 -0.063608 0.549117 (0.092639) 0.612724 (0.011361) 0.541681 0.613127 --->germline1---germline2: 3.9e-03 -0.000772 3.75e-03 -0.000702 0.005847 (0.001223) 0.006549 (0.002750) 0.005883 0.006644 --->germline1---dash-----: 3.96e-18 -0.607208 1.2e-173 -0.606877 0.005847 (0.001223) 0.612724 (0.011361) 0.005883 0.613127 --->germline2---dash-----: 3.96e-18 -0.606630 1.4e-173 -0.606175 0.006549 (0.002750) 0.612724 (0.011361) 0.006644 0.613127 ######accuracy###### --->fabia-------beagle1--: 3.96e-18 0.031755 4.45e-48 0.032429 0.999621 (0.000231) 0.967192 (0.011823) 0.999653 0.968162 --->fabia-------beagle2--: 3.96e-18 0.005619 1.42e-17 0.006969 0.999621 (0.000231) 0.992651 (0.006686) 0.999653 0.994215 --->fabia-------plink----: 4.08e-18 0.002008 1.32e-43 0.002026 0.999621 (0.000231) 0.997595 (0.000827) 0.999653 0.997611 --->fabia-------germline1: 3.96e-18 0.389573 3.85e-162 0.390192 0.999621 (0.000231) 0.609428 (0.009400) 0.999653 0.610867 --->fabia-------germline2: 3.96e-18 0.230800 8.54e-134 0.231187 0.999621 (0.000231) 0.768434 (0.010766) 0.999653 0.769565 --->fabia-------dash-----: 3.96e-18 0.612512 1.82e-173 0.612128 0.999621 (0.000231) 0.387493 (0.011383) 0.999653 0.387200 --->beagle1-----beagle2--: 3.87e-17 -0.026570 1.66e-36 -0.025460 0.967192 (0.011823) 0.992651 (0.006686) 0.968162 0.994215 --->beagle1-----plink----: 3.96e-18 -0.029777 6.48e-46 -0.030403 0.967192 (0.011823) 0.997595 (0.000827) 0.968162 0.997611 --->beagle1-----germline1: 3.96e-18 0.358340 1.57e-140 0.357764 0.967192 (0.011823) 0.609428 (0.009400) 0.968162 0.610867 --->beagle1-----germline2: 3.96e-18 0.199084 1.31e-113 0.198758 0.967192 (0.011823) 0.768434 (0.010766) 0.968162 0.769565 --->beagle1-----dash-----: 3.96e-18 0.580852 2.91e-152 0.579699 0.967192 (0.011823) 0.387493 (0.011383) 0.968162 0.387200 --->beagle2-----plink----: 5.25e-17 -0.003712 2.02e-11 -0.004944 0.992651 (0.006686) 0.997595 (0.000827) 0.994215 0.997611 --->beagle2-----germline1: 3.96e-18 0.383346 9.62e-152 0.383223 0.992651 (0.006686) 0.609428 (0.009400) 0.994215 0.610867 --->beagle2-----germline2: 3.96e-18 0.224285 4.57e-125 0.224217 0.992651 (0.006686) 0.768434 (0.010766) 0.994215 0.769565 --->beagle2-----dash-----: 3.96e-18 0.605965 7.88e-167 0.605159 0.992651 (0.006686) 0.387493 (0.011383) 0.994215 0.387200 --->plink-------germline1: 3.96e-18 0.387652 1.49e-161 0.388167 0.997595 (0.000827) 0.609428 (0.009400) 0.997611 0.610867 --->plink-------germline2: 3.96e-18 0.228758 2.87e-133 0.229161 0.997595 (0.000827) 0.768434 (0.010766) 0.997611 0.769565 --->plink-------dash-----: 3.96e-18 0.610487 1.74e-173 0.610102 0.997595 (0.000827) 0.387493 (0.011383) 0.997611 0.387200 --->germline1---germline2: 3.96e-18 -0.159065 1.12e-142 -0.159006 0.609428 (0.009400) 0.768434 (0.010766) 0.610867 0.769565 --->germline1---dash-----: 3.96e-18 0.223069 2.88e-105 0.221935 0.609428 (0.009400) 0.387493 (0.011383) 0.610867 0.387200 --->germline2---dash-----: 3.96e-18 0.382108 3.18e-127 0.380941 0.768434 (0.010766) 0.387493 (0.011383) 0.769565 0.387200 ######FPR###### --->fabia-------beagle1--: 3.96e-18 -0.031143 3.6e-47 -0.031760 3.2e-05 (9.33e-05) 0.031791 (0.011845) 0.000000 0.031163 --->fabia-------beagle2--: 3.96e-18 -0.004714 1.31e-14 -0.006037 3.2e-05 (9.33e-05) 0.006069 (0.006670) 0.000000 0.004474 --->fabia-------plink----: 3.96e-18 -0.002277 6.73e-48 -0.002310 3.2e-05 (9.33e-05) 0.002342 (0.000842) 0.000000 0.002246 --->fabia-------germline1: 3.96e-18 -0.390198 2.38e-162 -0.390796 3.2e-05 (9.33e-05) 0.390828 (0.009389) 0.000000 0.389469 --->fabia-------germline2: 3.96e-18 -0.230762 5.68e-134 -0.231170 3.2e-05 (9.33e-05) 0.231202 (0.010757) 0.000000 0.229822 --->fabia-------dash-----: 3.96e-18 -0.997029 5e-316 -0.997096 3.2e-05 (9.33e-05) 0.997128 (0.000663) 0.000000 0.997065 --->beagle1-----beagle2--: 3.87e-17 0.026804 1.1e-36 0.025723 0.031791 (0.011845) 0.006069 (0.006670) 0.031163 0.004474 --->beagle1-----plink----: 3.96e-18 0.028827 1.17e-44 0.029450 0.031791 (0.011845) 0.002342 (0.000842) 0.031163 0.002246 --->beagle1-----germline1: 3.96e-18 -0.359615 1.19e-140 -0.359036 0.031791 (0.011845) 0.390828 (0.009389) 0.031163 0.389469 --->beagle1-----germline2: 3.96e-18 -0.199711 1.03e-113 -0.199410 0.031791 (0.011845) 0.231202 (0.010757) 0.031163 0.229822 --->beagle1-----dash-----: 3.96e-18 -0.965877 3.86e-191 -0.965337 0.031791 (0.011845) 0.997128 (0.000663) 0.031163 0.997065 --->beagle2-----plink----: 2.46e-12 0.002496 1.13e-07 0.003727 0.006069 (0.006670) 0.002342 (0.000842) 0.004474 0.002246 --->beagle2-----germline1: 3.96e-18 -0.384871 5.81e-152 -0.384759 0.006069 (0.006670) 0.390828 (0.009389) 0.004474 0.389469 --->beagle2-----germline2: 3.96e-18 -0.225172 3.13e-125 -0.225133 0.006069 (0.006670) 0.231202 (0.010757) 0.004474 0.229822 --->beagle2-----dash-----: 3.96e-18 -0.992389 4.06e-216 -0.991059 0.006069 (0.006670) 0.997128 (0.000663) 0.004474 0.997065 --->plink-------germline1: 3.96e-18 -0.387972 1.04e-161 -0.388486 0.002342 (0.000842) 0.390828 (0.009389) 0.002246 0.389469 --->plink-------germline2: 3.96e-18 -0.228465 2.66e-133 -0.228860 0.002342 (0.000842) 0.231202 (0.010757) 0.002246 0.229822 --->plink-------dash-----: 3.96e-18 -0.994776 2.28e-291 -0.994786 0.002342 (0.000842) 0.997128 (0.000663) 0.002246 0.997065 --->germline1---germline2: 3.96e-18 0.159633 7.98e-143 0.159626 0.390828 (0.009389) 0.231202 (0.010757) 0.389469 0.229822 --->germline1---dash-----: 3.96e-18 -0.606926 1.21e-181 -0.606300 0.390828 (0.009389) 0.997128 (0.000663) 0.389469 0.997065 --->germline2---dash-----: 3.96e-18 -0.766356 8.07e-186 -0.765926 0.231202 (0.010757) 0.997128 (0.000663) 0.229822 0.997065 ######FDR###### --->fabia-------beagle1--: 3.58e-18 -0.977549 5.08e-100 -0.947214 0.039443 (0.097648) 0.986658 (0.013946) 0.000000 0.989619 --->fabia-------beagle2--: 1.95e-18 -0.934760 6.68e-85 -0.906567 0.039443 (0.097648) 0.946010 (0.089181) 0.000000 1.000000 --->fabia-------plink----: 3.96e-18 -0.589709 2.31e-65 -0.568627 0.039443 (0.097648) 0.608071 (0.093065) 0.000000 0.623945 --->fabia-------germline1: 3.96e-18 -0.993801 2.11e-100 -0.957622 0.039443 (0.097648) 0.997065 (0.000614) 0.000000 0.997047 --->fabia-------germline2: 3.96e-18 -0.993366 1.99e-100 -0.957261 0.039443 (0.097648) 0.996704 (0.001384) 0.000000 0.996656 --->fabia-------dash-----: 3.96e-18 -0.604947 1.37e-78 -0.573064 0.039443 (0.097648) 0.612507 (0.011383) 0.000000 0.612800 --->beagle1-----beagle2--: 6.18e-05 0.048848 3.67e-06 0.040647 0.986658 (0.013946) 0.946010 (0.089181) 0.989619 1.000000 --->beagle1-----plink----: 3.96e-18 0.370866 3.38e-63 0.378587 0.986658 (0.013946) 0.608071 (0.093065) 0.989619 0.623945 --->beagle1-----germline1: 3.31e-09 -0.009250 2.76e-11 -0.010408 0.986658 (0.013946) 0.997065 (0.000614) 0.989619 0.997047 --->beagle1-----germline2: 5.67e-09 -0.008980 1.03e-10 -0.010047 0.986658 (0.013946) 0.996704 (0.001384) 0.989619 0.996656 --->beagle1-----dash-----: 3.96e-18 0.374951 2.68e-131 0.374150 0.986658 (0.013946) 0.612507 (0.011383) 0.989619 0.612800 --->beagle2-----plink----: 4.74e-18 0.337240 7.38e-46 0.337940 0.946010 (0.089181) 0.608071 (0.093065) 1.000000 0.623945 --->beagle2-----germline1: 1.81e-02 -0.037981 1.09e-07 -0.051055 0.946010 (0.089181) 0.997065 (0.000614) 1.000000 0.997047 --->beagle2-----germline2: 2.46e-02 -0.037348 1.34e-07 -0.050694 0.946010 (0.089181) 0.996704 (0.001384) 1.000000 0.996656 --->beagle2-----dash-----: 4.33e-18 0.348120 3.48e-59 0.333503 0.946010 (0.089181) 0.612507 (0.011383) 1.000000 0.612800 --->plink-------germline1: 3.96e-18 -0.380872 1.12e-64 -0.388995 0.608071 (0.093065) 0.997065 (0.000614) 0.623945 0.997047 --->plink-------germline2: 3.96e-18 -0.380430 1.3e-64 -0.388634 0.608071 (0.093065) 0.996704 (0.001384) 0.623945 0.996656 --->plink-------dash-----: 7.37e-01 0.003549 6.34e-01 -0.004437 0.608071 (0.093065) 0.612507 (0.011383) 0.623945 0.612800 --->germline1---germline2: 3.34e-03 0.000394 3.09e-03 0.000361 0.997065 (0.000614) 0.996704 (0.001384) 0.997047 0.996656 --->germline1---dash-----: 3.96e-18 0.384176 5.56e-153 0.384558 0.997065 (0.000614) 0.612507 (0.011383) 0.997047 0.612800 --->germline2---dash-----: 3.96e-18 0.383799 3.15e-152 0.384197 0.996704 (0.001384) 0.612507 (0.011383) 0.996656 0.612800 ######specifity###### --->fabia-------beagle1--: 3.96e-18 0.031174 3.6e-47 0.031760 0.999968 (9.33e-05) 0.968209 (0.011845) 1.000000 0.968837 --->fabia-------beagle2--: 3.96e-18 0.004710 1.31e-14 0.006037 0.999968 (9.33e-05) 0.993931 (0.006670) 1.000000 0.995526 --->fabia-------plink----: 3.96e-18 0.002276 6.73e-48 0.002310 0.999968 (9.33e-05) 0.997658 (0.000842) 1.000000 0.997754 --->fabia-------germline1: 3.96e-18 0.390189 2.38e-162 0.390796 0.999968 (9.33e-05) 0.609172 (0.009389) 1.000000 0.610531 --->fabia-------germline2: 3.96e-18 0.230754 5.68e-134 0.231170 0.999968 (9.33e-05) 0.768798 (0.010757) 1.000000 0.770178 --->fabia-------dash-----: 3.96e-18 0.227757 7.05e-27 0.240557 0.999968 (9.33e-05) 0.759411 (0.162291) 1.000000 0.790928 --->beagle1-----beagle2--: 3.87e-17 -0.026791 1.1e-36 -0.025723 0.968209 (0.011845) 0.993931 (0.006670) 0.968837 0.995526 --->beagle1-----plink----: 3.96e-18 -0.028829 1.17e-44 -0.029450 0.968209 (0.011845) 0.997658 (0.000842) 0.968837 0.997754 --->beagle1-----germline1: 3.96e-18 0.359614 1.19e-140 0.359036 0.968209 (0.011845) 0.609172 (0.009389) 0.968837 0.610531 --->beagle1-----germline2: 3.96e-18 0.199699 1.03e-113 0.199410 0.968209 (0.011845) 0.768798 (0.010757) 0.968837 0.770178 --->beagle1-----dash-----: 9.75e-18 0.195546 8.47e-23 0.208797 0.968209 (0.011845) 0.759411 (0.162291) 0.968837 0.790928 --->beagle2-----plink----: 2.46e-12 -0.002469 1.13e-07 -0.003727 0.993931 (0.006670) 0.997658 (0.000842) 0.995526 0.997754 --->beagle2-----germline1: 3.96e-18 0.384870 5.81e-152 0.384759 0.993931 (0.006670) 0.609172 (0.009389) 0.995526 0.610531 --->beagle2-----germline2: 3.96e-18 0.225170 3.13e-125 0.225133 0.993931 (0.006670) 0.768798 (0.010757) 0.995526 0.770178 --->beagle2-----dash-----: 4.33e-18 0.221375 6.58e-26 0.234520 0.993931 (0.006670) 0.759411 (0.162291) 0.995526 0.790928 --->plink-------germline1: 3.96e-18 0.387950 1.04e-161 0.388486 0.997658 (0.000842) 0.609172 (0.009389) 0.997754 0.610531 --->plink-------germline2: 3.96e-18 0.228470 2.66e-133 0.228860 0.997658 (0.000842) 0.768798 (0.010757) 0.997754 0.770178 --->plink-------dash-----: 4.08e-18 0.225057 1.47e-26 0.238247 0.997658 (0.000842) 0.759411 (0.162291) 0.997754 0.790928 --->germline1---germline2: 3.96e-18 -0.159636 7.98e-143 -0.159626 0.609172 (0.009389) 0.768798 (0.010757) 0.610531 0.770178 --->germline1---dash-----: 1.21e-11 -0.163353 4.29e-15 -0.150239 0.609172 (0.009389) 0.759411 (0.162291) 0.610531 0.790928 --->germline2---dash-----: 8.73e-01 -0.003271 5.63e-01 0.009387 0.768798 (0.010757) 0.759411 (0.162291) 0.770178 0.790928 ######sensitivity###### --->fabia-------beagle1--: 1.01e-07 0.300614 1.79e-08 0.262203 0.533177 (0.326007) 0.270974 (0.279303) 0.641539 0.209895 --->fabia-------beagle2--: 2.44e-13 0.536985 4.31e-19 0.414185 0.533177 (0.326007) 0.118992 (0.168701) 0.641539 0.000000 --->fabia-------plink----: 4.08e-18 -0.387398 4.58e-24 -0.420720 0.533177 (0.326007) 0.953897 (0.081207) 0.641539 0.984891 --->fabia-------germline1: 7.71e-09 -0.232954 1.22e-10 -0.249027 0.533177 (0.326007) 0.782204 (0.145423) 0.641539 0.805161 --->fabia-------germline2: 4.32e-01 0.034613 6.94e-01 0.014771 0.533177 (0.326007) 0.518406 (0.208912) 0.641539 0.527691 --->fabia-------dash-----: 3.96e-18 -612022 2.02e-173 -611610 0.533 ( 0.326) 611611 ( 11361) 0.642 611951 --->beagle1-----beagle2--: 5.28e-11 0.252410 1.06e-12 0.151982 0.270974 (0.279303) 0.118992 (0.168701) 0.209895 0.000000 --->beagle1-----plink----: 4.08e-18 -0.712590 7.97e-43 -0.682923 0.270974 (0.279303) 0.953897 (0.081207) 0.209895 0.984891 --->beagle1-----germline1: 2.38e-17 -0.524891 9.39e-31 -0.511229 0.270974 (0.279303) 0.782204 (0.145423) 0.209895 0.805161 --->beagle1-----germline2: 2.27e-09 -0.249854 3.57e-11 -0.247431 0.270974 (0.279303) 0.518406 (0.208912) 0.209895 0.527691 --->beagle1-----dash-----: 3.96e-18 -612023 2.02e-173 -611610 0.271 ( 0.279) 611611 ( 11361) 0.21 611951 --->beagle2-----plink----: 3.95e-18 -0.863894 4.19e-67 -0.834905 0.118992 (0.168701) 0.953897 (0.081207) 0.000000 0.984891 --->beagle2-----germline1: 3.96e-18 -0.678050 2.15e-52 -0.663211 0.118992 (0.168701) 0.782204 (0.145423) 0.000000 0.805161 --->beagle2-----germline2: 2.45e-17 -0.398019 1.42e-28 -0.399414 0.118992 (0.168701) 0.518406 (0.208912) 0.000000 0.527691 --->beagle2-----dash-----: 3.96e-18 -612024 2.02e-173 -611611 0.119 ( 0.169) 611611 ( 11361) 0 611951 --->plink-------germline1: 1.44e-15 0.160906 1.5e-18 0.171693 0.953897 (0.081207) 0.782204 (0.145423) 0.984891 0.805161 --->plink-------germline2: 4.6e-18 0.433866 1.05e-35 0.435491 0.953897 (0.081207) 0.518406 (0.208912) 0.984891 0.527691 --->plink-------dash-----: 3.96e-18 -612022 2.02e-173 -611610 0.954 ( 0.0812) 611611 ( 11361) 0.985 611951 --->germline1---germline2: 3.87e-17 0.269240 1.47e-24 0.263798 0.782204 (0.145423) 0.518406 (0.208912) 0.805161 0.527691 --->germline1---dash-----: 3.96e-18 -612023 2.02e-173 -611610 0.782 ( 0.145) 611611 ( 11361) 0.805 611951 --->germline2---dash-----: 3.96e-18 -612023 2.02e-173 -611610 0.518 ( 0.209) 611611 ( 11361) 0.528 611951 ######trueN###### --->fabia-------beagle1--: 3.96e-18 1031042 4.15e-194 1031654 2e+06 ( 190) 966792 ( 11844) 2e+06 967366 --->fabia-------beagle2--: 3.96e-18 1e+06 1.11e-217 1005969 2e+06 ( 190) 992476 ( 6669) 2e+06 994013 --->fabia-------plink----: 3.96e-18 1e+06 1.04e-305 1e+06 2e+06 ( 190) 996198 ( 855) 2e+06 996292 --->fabia-------germline1: 3.96e-18 1389593 5.51e-217 1390165 2e+06 ( 190) 608281 ( 9373) 2e+06 609680 --->fabia-------germline2: 3.96e-18 1230376 6.42e-206 1230772 2e+06 ( 190) 767673 ( 10737) 2e+06 769044 --->fabia-------dash-----: 3.96e-18 1611932 4.44e-215 1611520 2e+06 ( 190) 386926 ( 11370) 2e+06 386664 --->beagle1-----beagle2--: 3.87e-17 -26781 1.1e-36 -25685 966792 ( 11844) 992476 ( 6669) 967366 994013 --->beagle1-----plink----: 3.96e-18 -28793 1.17e-44 -29407 966792 ( 11844) 996198 ( 855) 967366 996292 --->beagle1-----germline1: 3.96e-18 359102 1.23e-140 358511 966792 ( 11844) 608281 ( 9373) 967366 609680 --->beagle1-----germline2: 3.96e-18 199425 1.06e-113 199119 966792 ( 11844) 767673 ( 10737) 967366 769044 --->beagle1-----dash-----: 3.96e-18 580976 2.6e-152 579866 966792 ( 11844) 386926 ( 11370) 967366 386664 --->beagle2-----plink----: 2.43e-12 -2482 1.13e-07 -3722 992476 ( 6669) 996198 ( 855) 994013 996292 --->beagle2-----germline1: 3.96e-18 384298 5.93e-152 384196 992476 ( 6669) 608281 ( 9373) 994013 609680 --->beagle2-----germline2: 3.96e-18 224851 3.17e-125 224803 992476 ( 6669) 767673 ( 10737) 994013 769044 --->beagle2-----dash-----: 3.96e-18 606371 5.25e-167 605551 992476 ( 6669) 386926 ( 11370) 994013 386664 --->plink-------germline1: 3.96e-18 387405 1.06e-161 387918 996198 ( 855) 608281 ( 9373) 996292 609680 --->plink-------germline2: 3.96e-18 228122 2.7e-133 228525 996198 ( 855) 767673 ( 10737) 996292 769044 --->plink-------dash-----: 3.96e-18 609666 1.74e-173 609273 996198 ( 855) 386926 ( 11370) 996292 386664 --->germline1---germline2: 3.96e-18 -159411 7.86e-143 -159393 608281 ( 9373) 767673 ( 10737) 609680 769044 --->germline1---dash-----: 3.96e-18 222466 3.16e-105 221355 608281 ( 9373) 386926 ( 11370) 609680 386664 --->germline2---dash-----: 3.96e-18 381887 2.75e-127 380747 767673 ( 10737) 386926 ( 11370) 769044 386664 ######falseP###### --->fabia-------beagle1--: 3.96e-18 -31075 4.14e-47 -31681 63.9 ( 186) 31745 ( 11827) 0 31116 --->fabia-------beagle2--: 3.96e-18 -4688 1.72e-14 -5996 63.9 ( 186) 6060 ( 6660) 0 4468 --->fabia-------plink----: 3.96e-18 -2243 9.04e-47 -2274 63.9 ( 186) 2338 ( 841) 0 2242 --->fabia-------germline1: 3.96e-18 -389615 2.55e-162 -390192 63.9 ( 186) 390256 ( 9377) 0 388890 --->fabia-------germline2: 3.96e-18 -230402 5.93e-134 -230799 63.9 ( 186) 230863 ( 10743) 0 229484 --->fabia-------dash-----: 4.28e-13 -291 1.32e-15 -286 63.9 ( 186) 350 ( 232) 0 303 --->beagle1-----beagle2--: 3.87e-17 26781 1.1e-36 25685 31745 ( 11827) 6060 ( 6660) 31116 4468 --->beagle1-----plink----: 3.96e-18 28793 1.17e-44 29407 31745 ( 11827) 2338 ( 841) 31116 2242 --->beagle1-----germline1: 3.96e-18 -359101 1.23e-140 -358511 31745 ( 11827) 390256 ( 9377) 31116 388890 --->beagle1-----germline2: 3.96e-18 -199425 1.06e-113 -199119 31745 ( 11827) 230863 ( 10743) 31116 229484 --->beagle1-----dash-----: 3.96e-18 30807 7.85e-47 31395 31745 ( 11827) 350 ( 232) 31116 303 --->beagle2-----plink----: 2.43e-12 2482 1.13e-07 3722 6060 ( 6660) 2338 ( 841) 4468 2242 --->beagle2-----germline1: 3.96e-18 -384300 5.93e-152 -384196 6060 ( 6660) 390256 ( 9377) 4468 388890 --->beagle2-----germline2: 3.96e-18 -224851 3.17e-125 -224803 6060 ( 6660) 230863 ( 10743) 4468 229484 --->beagle2-----dash-----: 3.96e-18 4371 1.81e-13 5710 6060 ( 6660) 350 ( 232) 4468 303 --->plink-------germline1: 3.96e-18 -387403 1.06e-161 -387918 2338 ( 841) 390256 ( 9377) 2242 388890 --->plink-------germline2: 3.96e-18 -228122 2.7e-133 -228525 2338 ( 841) 230863 ( 10743) 2242 229484 --->plink-------dash-----: 3.96e-18 1976 2.38e-39 1988 2338 ( 841) 350 ( 232) 2242 303 --->germline1---germline2: 3.96e-18 159412 7.86e-143 159393 390256 ( 9377) 230863 ( 10743) 388890 229484 --->germline1---dash-----: 3.96e-18 389323 2.35e-162 389906 390256 ( 9377) 350 ( 232) 388890 303 --->germline2---dash-----: 3.96e-18 230103 5.95e-134 230513 230863 ( 10743) 350 ( 232) 229484 303 ######falseN###### --->fabia-------beagle1--: 2.98e-07 -417 8.31e-08 -369 695 ( 485) 1064 ( 409) 564 1160 --->fabia-------beagle2--: 4.57e-13 -753 4.44e-18 -594 695 ( 485) 1289 ( 254) 564 1377 --->fabia-------plink----: 4.08e-18 574 6e-24 628 695 ( 485) 66.8 ( 117) 564 22 --->fabia-------germline1: 3.86e-09 356 5.17e-11 379 695 ( 485) 316 ( 207) 564 284 --->fabia-------germline2: 5.99e-01 -36.5 8.92e-01 -7.61 695 ( 485) 703 ( 306) 564 698 --->fabia-------dash-----: 1.56e-09 -443 4.92e-11 -419 695 ( 485) 1114 ( 255) 564 1140 --->beagle1-----beagle2--: 5.28e-11 -371 1.97e-12 -225 1064 ( 409) 1289 ( 254) 1160 1377 --->beagle1-----plink----: 4.08e-18 1036 1.29e-42 997 1064 ( 409) 66.8 ( 117) 1160 22 --->beagle1-----germline1: 2.31e-17 764 1.97e-30 748 1064 ( 409) 316 ( 207) 1160 284 --->beagle1-----germline2: 2.71e-09 363 4.4e-11 361 1064 ( 409) 703 ( 306) 1160 698 --->beagle1-----dash-----: 5.41e-01 -28.5 2.98e-01 -50.1 1064 ( 409) 1114 ( 255) 1160 1140 --->beagle2-----plink----: 3.95e-18 1255 3.92e-66 1222 1289 ( 254) 66.8 ( 117) 1377 22 --->beagle2-----germline1: 3.96e-18 992 2.13e-51 973 1289 ( 254) 316 ( 207) 1377 284 --->beagle2-----germline2: 2.38e-17 582 1.86e-28 586 1289 ( 254) 703 ( 306) 1377 698 --->beagle2-----dash-----: 6.24e-06 167 1.82e-06 175 1289 ( 254) 1114 ( 255) 1377 1140 --->plink-------germline1: 1.46e-15 -235 7.63e-19 -249 66.8 ( 117) 316 ( 207) 22 284 --->plink-------germline2: 4.74e-18 -629 1.52e-35 -636 66.8 ( 117) 703 ( 306) 22 698 --->plink-------dash-----: 3.95e-18 -1074 3.85e-58 -1047 66.8 ( 117) 1114 ( 255) 22 1140 --->germline1---germline2: 3.87e-17 -394 3.4e-24 -387 316 ( 207) 703 ( 306) 284 698 --->germline1---dash-----: 3.38e-17 -826 1.16e-32 -798 316 ( 207) 1114 ( 255) 284 1140 --->germline2---dash-----: 2.94e-11 -425 1.25e-13 -411 703 ( 306) 1114 ( 255) 698 1140 ######trueP###### --->fabia-------beagle1--: 5.88e-08 455 7.81e-09 396 796 ( 489) 400 ( 418) 970 314 --->fabia-------beagle2--: 1.73e-13 801 1.37e-19 621 796 ( 489) 175 ( 246) 970 0 --->fabia-------plink----: 4.33e-18 -547 7.5e-23 -601 796 ( 489) 1397 ( 152) 970 1422 --->fabia-------germline1: 2.81e-08 -325 5.95e-10 -352 796 ( 489) 1148 ( 236) 970 1163 --->fabia-------germline2: 2.81e-01 63 5.29e-01 34.8 796 ( 489) 761 ( 318) 970 752 --->fabia-------dash-----: 8.31e-15 1020 9.23e-30 796 796 ( 489) 0.000204 ( 0.00136) 970 0 --->beagle1-----beagle2--: 5.28e-11 371 1.97e-12 225 400 ( 418) 175 ( 246) 314 0 --->beagle1-----plink----: 4.08e-18 -1036 1.29e-42 -997 400 ( 418) 1397 ( 152) 314 1422 --->beagle1-----germline1: 2.31e-17 -764 1.97e-30 -748 400 ( 418) 1148 ( 236) 314 1163 --->beagle1-----germline2: 2.71e-09 -363 4.4e-11 -361 400 ( 418) 761 ( 318) 314 752 --->beagle1-----dash-----: 4.14e-13 550 9.71e-16 400 400 ( 418) 0.000204 ( 0.00136) 314 0 --->beagle2-----plink----: 3.95e-18 -1255 3.92e-66 -1222 175 ( 246) 1397 ( 152) 0 1422 --->beagle2-----germline1: 3.96e-18 -992 2.13e-51 -973 175 ( 246) 1148 ( 236) 0 1163 --->beagle2-----germline2: 2.38e-17 -582 1.86e-28 -586 175 ( 246) 761 ( 318) 0 752 --->beagle2-----dash-----: 1e+00 0.000000 1.91e-10 174.819796 174.820000 (246.189398) 0.000204 (0.001358) 0.000000 0.000000 --->plink-------germline1: 1.46e-15 235 7.63e-19 249 1397 ( 152) 1148 ( 236) 1422 1163 --->plink-------germline2: 4.74e-18 629 1.52e-35 636 1397 ( 152) 761 ( 318) 1422 752 --->plink-------dash-----: 3.95e-18 1414 1.14e-97 1397 1397 ( 152) 0.000204 ( 0.00136) 1422 0 --->germline1---germline2: 3.87e-17 394 3.4e-24 387 1148 ( 236) 761 ( 318) 1163 752 --->germline1---dash-----: 3.96e-18 1163 7.43e-71 1148 1148 ( 236) 0.000204 ( 0.00136) 1163 0 --->germline2---dash-----: 3.96e-18 761 5.51e-43 761 761 ( 318) 0.000204 ( 0.00136) 752 0 ######MatthewsSnps###### --->fabia-------beagle1--: 4.4e-16 0.605983 6.39e-31 0.535927 0.588545 (0.322022) 0.052617 (0.082374) 0.717604 0.065133 --->fabia-------beagle2--: 1.13e-14 0.460086 8.26e-21 0.439674 0.588545 (0.322022) 0.148871 (0.213852) 0.717604 0.172225 --->fabia-------plink----: 6.36e-04 0.211316 2.79e-05 0.145208 0.588545 (0.322022) 0.443336 (0.084969) 0.717604 0.433896 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.588545 (0.322022) 0.000000 (0.000000) 0.717604 0.000000 --->fabia-------germline2: 4.65e-15 0.741288 2.02e-33 0.587476 0.588545 (0.322022) 0.001069 (0.002957) 0.717604 0.000000 --->fabia-------dash-----: 2.94e-15 0.635421 3.1e-31 0.549325 0.588545 (0.322022) 0.039219 (2.58e-05) 0.717604 0.039216 --->beagle1-----beagle2--: 4.35e-06 -0.094961 9.43e-06 -0.096253 0.052617 (0.082374) 0.148871 (0.213852) 0.065133 0.172225 --->beagle1-----plink----: 3.96e-18 -0.376346 6.82e-56 -0.390719 0.052617 (0.082374) 0.443336 (0.084969) 0.065133 0.433896 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.052617 (0.082374) 0.000000 (0.000000) 0.065133 0.000000 --->beagle1-----germline2: 8.2e-10 0.066744 1.06e-08 0.051548 0.052617 (0.082374) 0.001069 (0.002957) 0.065133 0.000000 --->beagle1-----dash-----: 6.46e-07 0.027243 1.07e-01 0.013398 0.052617 (0.082374) 0.039219 (2.58e-05) 0.065133 0.039216 --->beagle2-----plink----: 1.25e-15 -0.299659 8.44e-23 -0.294465 0.148871 (0.213852) 0.443336 (0.084969) 0.172225 0.433896 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.148871 (0.213852) 0.000000 (0.000000) 0.172225 0.000000 --->beagle2-----germline2: 4.9e-08 0.137422 4.53e-10 0.147802 0.148871 (0.213852) 0.001069 (0.002957) 0.172225 0.000000 --->beagle2-----dash-----: 3e-06 0.098714 1.46e-06 0.109652 0.148871 (0.213852) 0.039219 (2.58e-05) 0.172225 0.039216 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.443336 (0.084969) 0.000000 (0.000000) 0.433896 0.000000 --->plink-------germline2: 3.96e-18 0.436501 8.71e-74 0.442267 0.443336 (0.084969) 0.001069 (0.002957) 0.433896 0.000000 --->plink-------dash-----: 3.96e-18 0.398127 5.36e-70 0.404117 0.443336 (0.084969) 0.039219 (2.58e-05) 0.433896 0.039216 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.001069 (0.002957) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.039219 (2.58e-05) 0.000000 0.039216 --->germline2---dash-----: 3.32e-21 -0.039133 2.75e-112 -0.038150 0.001069 (0.002957) 0.039219 (2.58e-05) 0.000000 0.039216 ######F1Snps###### --->fabia-------beagle1--: 2.12e-15 0.601414 6.68e-30 0.519705 0.567863 (0.319236) 0.048158 (0.016209) 0.684211 0.047176 --->fabia-------beagle2--: 1.09e-14 0.541731 1.23e-22 0.439069 0.567863 (0.319236) 0.128794 (0.149618) 0.684211 0.093546 --->fabia-------plink----: 1.34e-07 0.258029 5.7e-09 0.212441 0.567863 (0.319236) 0.355423 (0.100723) 0.684211 0.339561 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.567863 (0.319236) 0.039216 (0.000000) 0.684211 0.039216 --->fabia-------germline2: 2.99e-15 0.596314 2.76e-30 0.528629 0.567863 (0.319236) 0.039234 (5.47e-05) 0.684211 0.039216 --->fabia-------dash-----: 2.94e-15 0.615323 2.05e-31 0.547772 0.567863 (0.319236) 0.020091 (0.000668) 0.684211 0.020000 --->beagle1-----beagle2--: 7.13e-07 -0.076041 3.23e-07 -0.080637 0.048158 (0.016209) 0.128794 (0.149618) 0.047176 0.093546 --->beagle1-----plink----: 3.96e-18 -0.298838 2.6e-52 -0.307265 0.048158 (0.016209) 0.355423 (0.100723) 0.047176 0.339561 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.048158 (0.016209) 0.039216 (0.000000) 0.047176 0.039216 --->beagle1-----germline2: 1.94e-10 0.009190 2.9e-07 0.008924 0.048158 (0.016209) 0.039234 (5.47e-05) 0.047176 0.039216 --->beagle1-----dash-----: 1.82e-17 0.028341 8.85e-32 0.028067 0.048158 (0.016209) 0.020091 (0.000668) 0.047176 0.020000 --->beagle2-----plink----: 6.03e-15 -0.236532 1.41e-22 -0.226628 0.128794 (0.149618) 0.355423 (0.100723) 0.093546 0.339561 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.128794 (0.149618) 0.039216 (0.000000) 0.093546 0.039216 --->beagle2-----germline2: 1.35e-06 0.071873 3.46e-08 0.089560 0.128794 (0.149618) 0.039234 (5.47e-05) 0.093546 0.039216 --->beagle2-----dash-----: 3.4e-09 0.091081 8.66e-11 0.108703 0.128794 (0.149618) 0.020091 (0.000668) 0.093546 0.020000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.355423 (0.100723) 0.039216 (0.000000) 0.339561 0.039216 --->plink-------germline2: 3.96e-18 0.307826 2.91e-53 0.316188 0.355423 (0.100723) 0.039234 (5.47e-05) 0.339561 0.039216 --->plink-------dash-----: 3.96e-18 0.326982 1.49e-55 0.335332 0.355423 (0.100723) 0.020091 (0.000668) 0.339561 0.020000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.039216 (0.000000) 0.039234 (5.47e-05) 0.039216 0.039216 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.039216 (0.000000) 0.020091 (0.000668) 0.039216 0.020000 --->germline2---dash-----: 3.32e-21 0.019257 4e-148 0.019143 0.039234 (5.47e-05) 0.020091 (0.000668) 0.039216 0.020000 ######accuracySnps###### --->fabia-------beagle1--: 3.96e-18 0.760500 5.76e-74 0.749287 0.988438 (0.006337) 0.239151 (0.142603) 0.990300 0.207100 --->fabia-------beagle2--: 3.96e-18 0.207077 2.89e-27 0.225841 0.988438 (0.006337) 0.762597 (0.150030) 0.990300 0.784300 --->fabia-------plink----: 4.08e-18 0.067465 9.9e-38 0.069055 0.988438 (0.006337) 0.919383 (0.032890) 0.990300 0.922200 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.988438 (0.006337) 0.020000 (0.000000) 0.990300 0.020000 --->fabia-------germline2: 3.74e-18 0.968377 2.54e-217 0.967960 0.988438 (0.006337) 0.020478 (0.001417) 0.990300 0.020000 --->fabia-------dash-----: 3.67e-18 -0.011147 2.76e-33 -0.011469 0.988438 (0.006337) 0.999907 (0.000682) 0.990300 1.000000 --->beagle1-----beagle2--: 5.66e-17 -0.572265 1.77e-44 -0.523446 0.239151 (0.142603) 0.762597 (0.150030) 0.207100 0.784300 --->beagle1-----plink----: 3.96e-18 -0.690550 1.39e-70 -0.680232 0.239151 (0.142603) 0.919383 (0.032890) 0.207100 0.922200 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.239151 (0.142603) 0.020000 (0.000000) 0.207100 0.020000 --->beagle1-----germline2: 4.33e-18 0.207838 6.37e-28 0.218673 0.239151 (0.142603) 0.020478 (0.001417) 0.207100 0.020000 --->beagle1-----dash-----: 3.96e-18 -0.771618 9.71e-75 -0.760756 0.239151 (0.142603) 0.999907 (0.000682) 0.207100 1.000000 --->beagle2-----plink----: 4.95e-16 -0.140688 7.47e-18 -0.156786 0.762597 (0.150030) 0.919383 (0.032890) 0.784300 0.922200 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.762597 (0.150030) 0.020000 (0.000000) 0.784300 0.020000 --->beagle2-----germline2: 3.96e-18 0.762014 1.35e-71 0.742119 0.762597 (0.150030) 0.020478 (0.001417) 0.784300 0.020000 --->beagle2-----dash-----: 3.96e-18 -0.217301 7.34e-29 -0.237310 0.762597 (0.150030) 0.999907 (0.000682) 0.784300 1.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.919383 (0.032890) 0.020000 (0.000000) 0.922200 0.020000 --->plink-------germline2: 3.95e-18 0.900652 2.02e-144 0.898905 0.919383 (0.032890) 0.020478 (0.001417) 0.922200 0.020000 --->plink-------dash-----: 3.96e-18 -0.078593 8.47e-44 -0.080524 0.919383 (0.032890) 0.999907 (0.000682) 0.922200 1.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.020000 (0.000000) 0.020478 (0.001417) 0.020000 0.020000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.020000 (0.000000) 0.999907 (0.000682) 0.020000 1.000000 --->germline2---dash-----: 3.32e-21 -0.980000 3.02e-271 -0.979429 0.020478 (0.001417) 0.999907 (0.000682) 0.020000 1.000000 ######FPRSnps###### --->fabia-------beagle1--: 3.96e-18 -0.785374 3.63e-74 -0.773691 0.001359 (0.004722) 0.775050 (0.146229) 0.000000 0.803929 --->fabia-------beagle2--: 3.96e-18 -0.211653 1.17e-27 -0.232602 0.001359 (0.004722) 0.233961 (0.152644) 0.000000 0.203673 --->fabia-------plink----: 3.95e-18 -0.078882 6.93e-43 -0.080742 0.001359 (0.004722) 0.082101 (0.033624) 0.000000 0.079388 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.001359 (0.004722) 1.000000 (0.000000) 0.000000 1.000000 --->fabia-------germline2: 6.95e-20 -0.999939 1.97e-230 -0.998153 0.001359 (0.004722) 0.999512 (0.001445) 0.000000 1.000000 --->fabia-------dash-----: 1.62e-20 -0.979944 2.23e-231 -0.978639 0.001359 (0.004722) 0.979998 (1.34e-05) 0.000000 0.980000 --->beagle1-----beagle2--: 5.66e-17 0.591784 7.5e-45 0.541089 0.775050 (0.146229) 0.233961 (0.152644) 0.803929 0.203673 --->beagle1-----plink----: 3.96e-18 0.703663 2.74e-70 0.692949 0.775050 (0.146229) 0.082101 (0.033624) 0.803929 0.079388 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.775050 (0.146229) 1.000000 (0.000000) 0.803929 1.000000 --->beagle1-----germline2: 4.33e-18 -0.213331 5.93e-28 -0.224462 0.775050 (0.146229) 0.999512 (0.001445) 0.803929 1.000000 --->beagle1-----dash-----: 8.65e-18 -0.193577 3.06e-25 -0.204948 0.775050 (0.146229) 0.979998 (1.34e-05) 0.803929 0.980000 --->beagle2-----plink----: 1e-15 0.134724 9.09e-17 0.151860 0.233961 (0.152644) 0.082101 (0.033624) 0.203673 0.079388 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.233961 (0.152644) 1.000000 (0.000000) 0.203673 1.000000 --->beagle2-----germline2: 3.96e-18 -0.786633 3.66e-72 -0.765551 0.233961 (0.152644) 0.999512 (0.001445) 0.203673 1.000000 --->beagle2-----dash-----: 3.96e-18 -0.767086 4.02e-71 -0.746037 0.233961 (0.152644) 0.979998 (1.34e-05) 0.203673 0.980000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.082101 (0.033624) 1.000000 (0.000000) 0.079388 1.000000 --->plink-------germline2: 3.96e-18 -0.919189 2.37e-144 -0.917411 0.082101 (0.033624) 0.999512 (0.001445) 0.079388 1.000000 --->plink-------dash-----: 3.95e-18 -0.899770 2.67e-143 -0.897897 0.082101 (0.033624) 0.979998 (1.34e-05) 0.079388 0.980000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.999512 (0.001445) 1.000000 1.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.979998 (1.34e-05) 1.000000 0.980000 --->germline2---dash-----: 3.32e-21 0.019906 2.87e-114 0.019514 0.999512 (0.001445) 0.979998 (1.34e-05) 1.000000 0.980000 ######FDRSnps###### --->fabia-------beagle1--: 3.95e-18 -0.973382 3.55e-87 -0.931396 0.043857 (0.127564) 0.975253 (0.008466) 0.000000 0.975842 --->fabia-------beagle2--: 2.81e-18 -0.918878 5.65e-73 -0.879286 0.043857 (0.127564) 0.923143 (0.100123) 0.000000 0.950932 --->fabia-------plink----: 3.96e-18 -0.768168 1.85e-71 -0.734676 0.043857 (0.127564) 0.778533 (0.080368) 0.000000 0.795499 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.043857 (0.127564) 0.980000 (0.000000) 0.000000 0.980000 --->fabia-------germline2: 6.95e-20 -0.979925 4.02e-88 -0.936133 0.043857 (0.127564) 0.979990 (2.85e-05) 0.000000 0.980000 --->fabia-------dash-----: 1e+00 0.000000 8.81e-04 0.043764 0.043857 (0.127564) 9.29e-05 (0.000682) 0.000000 0.000000 --->beagle1-----beagle2--: 6.69e-07 0.045748 7.97e-07 0.052110 0.975253 (0.008466) 0.923143 (0.100123) 0.975842 0.950932 --->beagle1-----plink----: 3.96e-18 0.187579 5.49e-44 0.196721 0.975253 (0.008466) 0.778533 (0.080368) 0.975842 0.795499 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.975253 (0.008466) 0.980000 (0.000000) 0.975842 0.980000 --->beagle1-----germline2: 1.9e-10 -0.004777 1.95e-07 -0.004737 0.975253 (0.008466) 0.979990 (2.85e-05) 0.975842 0.980000 --->beagle1-----dash-----: 3.95e-18 0.975112 9.41e-206 0.975160 0.975253 (0.008466) 9.29e-05 (0.000682) 0.975842 0.000000 --->beagle2-----plink----: 5.01e-14 0.150558 8.02e-20 0.144611 0.923143 (0.100123) 0.778533 (0.080368) 0.950932 0.795499 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.923143 (0.100123) 0.980000 (0.000000) 0.950932 0.980000 --->beagle2-----germline2: 1.31e-06 -0.040031 1.37e-07 -0.056847 0.923143 (0.100123) 0.979990 (2.85e-05) 0.950932 0.980000 --->beagle2-----dash-----: 2.35e-18 0.939795 8.6e-98 0.923050 0.923143 (0.100123) 9.29e-05 (0.000682) 0.950932 0.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.778533 (0.080368) 0.980000 (0.000000) 0.795499 0.980000 --->plink-------germline2: 3.96e-18 -0.192503 1.15e-44 -0.201458 0.778533 (0.080368) 0.979990 (2.85e-05) 0.795499 0.980000 --->plink-------dash-----: 3.96e-18 0.787377 6.5e-100 0.778440 0.778533 (0.080368) 9.29e-05 (0.000682) 0.795499 0.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.980000 (0.000000) 0.979990 (2.85e-05) 0.980000 0.980000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.980000 (0.000000) 9.29e-05 (0.000682) 0.980000 0.000000 --->germline2---dash-----: 3.32e-21 0.980000 1.13e-313 0.979898 0.979990 (2.85e-05) 9.29e-05 (0.000682) 0.980000 0.000000 ######specifitySnps###### --->fabia-------beagle1--: 3.96e-18 0.785442 3.63e-74 0.773691 0.998641 (0.004722) 0.224950 (0.146229) 1.000000 0.196071 --->fabia-------beagle2--: 3.96e-18 0.211636 1.17e-27 0.232602 0.998641 (0.004722) 0.766039 (0.152644) 1.000000 0.796327 --->fabia-------plink----: 3.95e-18 0.078900 6.93e-43 0.080742 0.998641 (0.004722) 0.917899 (0.033624) 1.000000 0.920612 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.998641 (0.004722) 0.000000 (0.000000) 1.000000 0.000000 --->fabia-------germline2: 6.95e-20 0.999939 1.97e-230 0.998153 0.998641 (0.004722) 0.000488 (0.001445) 1.000000 0.000000 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.998641 (0.004722) 1.000000 (0.000000) 1.000000 1.000000 --->beagle1-----beagle2--: 5.66e-17 -0.591718 7.5e-45 -0.541089 0.224950 (0.146229) 0.766039 (0.152644) 0.196071 0.796327 --->beagle1-----plink----: 3.96e-18 -0.703627 2.74e-70 -0.692949 0.224950 (0.146229) 0.917899 (0.033624) 0.196071 0.920612 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.224950 (0.146229) 0.000000 (0.000000) 0.196071 0.000000 --->beagle1-----germline2: 4.33e-18 0.213331 5.93e-28 0.224462 0.224950 (0.146229) 0.000488 (0.001445) 0.196071 0.000000 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.224950 (0.146229) 1.000000 (0.000000) 0.196071 1.000000 --->beagle2-----plink----: 1e-15 -0.134706 9.09e-17 -0.151860 0.766039 (0.152644) 0.917899 (0.033624) 0.796327 0.920612 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.766039 (0.152644) 0.000000 (0.000000) 0.796327 0.000000 --->beagle2-----germline2: 3.96e-18 0.786677 3.66e-72 0.765551 0.766039 (0.152644) 0.000488 (0.001445) 0.796327 0.000000 --->beagle2-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.766039 (0.152644) 1.000000 (0.000000) 0.796327 1.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.917899 (0.033624) 0.000000 (0.000000) 0.920612 0.000000 --->plink-------germline2: 3.96e-18 0.919207 2.37e-144 0.917411 0.917899 (0.033624) 0.000488 (0.001445) 0.920612 0.000000 --->plink-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.917899 (0.033624) 1.000000 (0.000000) 0.920612 1.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000488 (0.001445) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 1.000000 (0.000000) 0.000000 1.000000 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000488 (0.001445) 1.000000 (0.000000) 0.000000 1.000000 ######sensitivitySnps###### --->fabia-------beagle1--: 2.71e-15 -0.450006 1.2e-22 -0.446500 0.488500 (0.299736) 0.935000 (0.232337) 0.555000 1.000000 --->fabia-------beagle2--: 1.22e-01 -0.142514 5.42e-02 -0.105450 0.488500 (0.299736) 0.593950 (0.479539) 0.555000 1.000000 --->fabia-------plink----: 3.83e-18 -0.485036 4.68e-31 -0.503600 0.488500 (0.299736) 0.992100 (0.025437) 0.555000 1.000000 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.488500 (0.299736) 1.000000 (0.000000) 0.555000 1.000000 --->fabia-------germline2: 1e+00 0.000000 1e+00 0.000000 0.488500 (0.299736) 1.000000 (0.000000) 0.555000 1.000000 --->fabia-------dash-----: 3.72e-12 0.607502 5.32e-01 -0.421500 0.488500 (0.299736) 0.910000 (6.680433) 0.555000 0.000000 --->beagle1-----beagle2--: 1e+00 0.000000 6.06e-11 0.341050 0.935000 (0.232337) 0.593950 (0.479539) 1.000000 1.000000 --->beagle1-----plink----: 1e+00 0.000000 1.71e-02 -0.057100 0.935000 (0.232337) 0.992100 (0.025437) 1.000000 1.000000 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.935000 (0.232337) 1.000000 (0.000000) 1.000000 1.000000 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 0.935000 (0.232337) 1.000000 (0.000000) 1.000000 1.000000 --->beagle1-----dash-----: 4.33e-18 1.000000 9.7e-01 0.025000 0.935000 (0.232337) 0.910000 (6.680433) 1.000000 0.000000 --->beagle2-----plink----: 1e+00 0.000000 4.99e-13 -0.398150 0.593950 (0.479539) 0.992100 (0.025437) 1.000000 1.000000 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.593950 (0.479539) 1.000000 (0.000000) 1.000000 1.000000 --->beagle2-----germline2: 1e+00 0.000000 1e+00 0.000000 0.593950 (0.479539) 1.000000 (0.000000) 1.000000 1.000000 --->beagle2-----dash-----: 1.33e-10 1.000000 6.35e-01 -0.316050 0.593950 (0.479539) 0.910000 (6.680433) 1.000000 0.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.992100 (0.025437) 1.000000 (0.000000) 1.000000 1.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 0.992100 (0.025437) 1.000000 (0.000000) 1.000000 1.000000 --->plink-------dash-----: 1.02e-17 0.999931 9.03e-01 0.082100 0.992100 (0.025437) 0.910000 (6.680433) 1.000000 0.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 1.000000 (0.000000) 1.000000 1.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.910000 (6.680433) 1.000000 0.000000 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.910000 (6.680433) 1.000000 0.000000 ######trueNSnps###### --->fabia-------beagle1--: 3.96e-18 7697 3.63e-74 7582 9787 ( 46.3) 2205 ( 1433) 9800 1922 --->fabia-------beagle2--: 3.96e-18 2074 1.17e-27 2280 9787 ( 46.3) 7507 ( 1496) 9800 7804 --->fabia-------plink----: 3.95e-18 773 6.93e-43 791 9787 ( 46.3) 8995 ( 330) 9800 9022 --->fabia-------germline1: 1e+00 0 1e+00 0 9787 ( 46.3) 0 ( 0) 9800 0 --->fabia-------germline2: 6.95e-20 9800 1.97e-230 9782 9787 ( 46.3) 4.78 ( 14.2) 9800 0 --->fabia-------dash-----: 1e+00 0 9.6e-03 -12.4 9787 ( 46.3) 9799 ( 6.68) 9800 9800 --->beagle1-----beagle2--: 5.66e-17 -5799 7.5e-45 -5303 2205 ( 1433) 7507 ( 1496) 1922 7804 --->beagle1-----plink----: 3.96e-18 -6896 2.74e-70 -6791 2205 ( 1433) 8995 ( 330) 1922 9022 --->beagle1-----germline1: 1e+00 0 1e+00 0 2205 ( 1433) 0 ( 0) 1922 0 --->beagle1-----germline2: 4.33e-18 2091 5.93e-28 2200 2205 ( 1433) 4.78 ( 14.2) 1922 0 --->beagle1-----dash-----: 3.96e-18 -7706 1.83e-74 -7595 2205 ( 1433) 9799 ( 6.68) 1922 9800 --->beagle2-----plink----: 9.87e-16 -1320 9.09e-17 -1488 7507 ( 1496) 8995 ( 330) 7804 9022 --->beagle2-----germline1: 1e+00 0 1e+00 0 7507 ( 1496) 0 ( 0) 7804 0 --->beagle2-----germline2: 3.96e-18 7709 3.66e-72 7502 7507 ( 1496) 4.78 ( 14.2) 7804 0 --->beagle2-----dash-----: 3.96e-18 -2085 6.96e-28 -2292 7507 ( 1496) 9799 ( 6.68) 7804 9800 --->plink-------germline1: 1e+00 0 1e+00 0 8995 ( 330) 0 ( 0) 9022 0 --->plink-------germline2: 3.95e-18 9008 2.37e-144 8991 8995 ( 330) 4.78 ( 14.2) 9022 0 --->plink-------dash-----: 3.95e-18 -785 1.18e-43 -804 8995 ( 330) 9799 ( 6.68) 9022 9800 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 4.780000 (14.165387) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0 1e+00 0 0 ( 0) 9799 ( 6.68) 0 9800 --->germline2---dash-----: 3.32e-21 -9800 1.73e-271 -9794 4.78 ( 14.2) 9799 ( 6.68) 0 9800 ######falsePSnps###### --->fabia-------beagle1--: 3.96e-18 -7697 3.63e-74 -7582 13.3 ( 46.3) 7595 ( 1433) 0 7878 --->fabia-------beagle2--: 3.96e-18 -2075 1.17e-27 -2280 13.3 ( 46.3) 2293 ( 1496) 0 1996 --->fabia-------plink----: 3.95e-18 -773 6.93e-43 -791 13.3 ( 46.3) 805 ( 330) 0 778 --->fabia-------germline1: 1e+00 0 1e+00 0 13.3 ( 46.3) 9800 ( 0) 0 9800 --->fabia-------germline2: 6.95e-20 -9800 1.97e-230 -9782 13.3 ( 46.3) 9795 ( 14.2) 0 9800 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 13.320000 (46.273644) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----beagle2--: 5.66e-17 5799 7.5e-45 5303 7595 ( 1433) 2293 ( 1496) 7878 1996 --->beagle1-----plink----: 3.96e-18 6896 2.74e-70 6791 7595 ( 1433) 805 ( 330) 7878 778 --->beagle1-----germline1: 1e+00 0 1e+00 0 7595 ( 1433) 9800 ( 0) 7878 9800 --->beagle1-----germline2: 4.33e-18 -2091 5.93e-28 -2200 7595 ( 1433) 9795 ( 14.2) 7878 9800 --->beagle1-----dash-----: 1e+00 0 1e+00 0 7595 ( 1433) 0 ( 0) 7878 0 --->beagle2-----plink----: 9.87e-16 1320 9.09e-17 1488 2293 ( 1496) 805 ( 330) 1996 778 --->beagle2-----germline1: 1e+00 0 1e+00 0 2293 ( 1496) 9800 ( 0) 1996 9800 --->beagle2-----germline2: 3.96e-18 -7709 3.66e-72 -7502 2293 ( 1496) 9795 ( 14.2) 1996 9800 --->beagle2-----dash-----: 1e+00 0 1e+00 0 2293 ( 1496) 0 ( 0) 1996 0 --->plink-------germline1: 1e+00 0 1e+00 0 805 ( 330) 9800 ( 0) 778 9800 --->plink-------germline2: 3.95e-18 -9008 2.37e-144 -8991 805 ( 330) 9795 ( 14.2) 778 9800 --->plink-------dash-----: 1e+00 0 1e+00 0 805 ( 330) 0 ( 0) 778 0 --->germline1---germline2: 1e+00 0 1e+00 0 9800 ( 0) 9795 ( 14.2) 9800 9800 --->germline1---dash-----: 1e+00 0 1e+00 0 9800 ( 0) 0 ( 0) 9800 0 --->germline2---dash-----: 1e+00 0 1e+00 0 9795 ( 14.2) 0 ( 0) 9800 0 ######falseNSnps###### --->fabia-------beagle1--: 2.71e-15 90 1.2e-22 89.3 102 ( 59.9) 13 ( 46.5) 89 0 --->fabia-------beagle2--: 1.19e-01 28.5 5.42e-02 21.1 102 ( 59.9) 81.2 ( 95.9) 89 0 --->fabia-------plink----: 3.83e-18 97 4.68e-31 101 102 ( 59.9) 1.58 ( 5.09) 89 0 --->fabia-------germline1: 1e+00 0 1e+00 0 102 ( 59.9) 0 ( 0) 89 0 --->fabia-------germline2: 1e+00 0 1e+00 0 102 ( 59.9) 0 ( 0) 89 0 --->fabia-------dash-----: 1e+00 0 1e+00 0 102 ( 59.9) 200 ( 0) 89 200 --->beagle1-----beagle2--: 1e+00 0.000000 6.06e-11 -68.210000 13.000000 (46.467323) 81.210000 (95.907815) 0.000000 0.000000 --->beagle1-----plink----: 1e+00 0.000000 1.71e-02 11.420000 13.000000 (46.467323) 1.580000 (5.087477) 0.000000 0.000000 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 13.000000 (46.467323) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 13.000000 (46.467323) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----dash-----: 1e+00 0 1e+00 0 13 ( 46.5) 200 ( 0) 0 200 --->beagle2-----plink----: 1e+00 0.000000 4.99e-13 79.630000 81.210000 (95.907815) 1.580000 (5.087477) 0.000000 0.000000 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 81.210000 (95.907815) 0.000000 (0.000000) 0.000000 0.000000 --->beagle2-----germline2: 1e+00 0.000000 1e+00 0.000000 81.210000 (95.907815) 0.000000 (0.000000) 0.000000 0.000000 --->beagle2-----dash-----: 1e+00 0 1e+00 0 81.2 ( 95.9) 200 ( 0) 0 200 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 1.580000 (5.087477) 0.000000 (0.000000) 0.000000 0.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 1.580000 (5.087477) 0.000000 (0.000000) 0.000000 0.000000 --->plink-------dash-----: 1e+00 0 1e+00 0 1.58 ( 5.09) 200 ( 0) 0 200 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0 1e+00 0 0 ( 0) 200 ( 0) 0 200 --->germline2---dash-----: 1e+00 0 1e+00 0 0 ( 0) 200 ( 0) 0 200 ######truePSnps###### --->fabia-------beagle1--: 2.71e-15 -90 1.2e-22 -89.3 97.7 ( 59.9) 187 ( 46.5) 111 200 --->fabia-------beagle2--: 1.19e-01 -28.5 5.42e-02 -21.1 97.7 ( 59.9) 119 ( 95.9) 111 200 --->fabia-------plink----: 3.83e-18 -97 4.68e-31 -101 97.7 ( 59.9) 198 ( 5.09) 111 200 --->fabia-------germline1: 1e+00 0 1e+00 0 97.7 ( 59.9) 200 ( 0) 111 200 --->fabia-------germline2: 1e+00 0 1e+00 0 97.7 ( 59.9) 200 ( 0) 111 200 --->fabia-------dash-----: 1e+00 0 1e+00 0 97.7 ( 59.9) 0 ( 0) 111 0 --->beagle1-----beagle2--: 1e+00 0 6.06e-11 68.2 187 ( 46.5) 119 ( 95.9) 200 200 --->beagle1-----plink----: 1e+00 0 1.71e-02 -11.4 187 ( 46.5) 198 ( 5.09) 200 200 --->beagle1-----germline1: 1e+00 0 1e+00 0 187 ( 46.5) 200 ( 0) 200 200 --->beagle1-----germline2: 1e+00 0 1e+00 0 187 ( 46.5) 200 ( 0) 200 200 --->beagle1-----dash-----: 1e+00 0 1e+00 0 187 ( 46.5) 0 ( 0) 200 0 --->beagle2-----plink----: 1e+00 0 4.99e-13 -79.6 119 ( 95.9) 198 ( 5.09) 200 200 --->beagle2-----germline1: 1e+00 0 1e+00 0 119 ( 95.9) 200 ( 0) 200 200 --->beagle2-----germline2: 1e+00 0 1e+00 0 119 ( 95.9) 200 ( 0) 200 200 --->beagle2-----dash-----: 1e+00 0 1e+00 0 119 ( 95.9) 0 ( 0) 200 0 --->plink-------germline1: 1e+00 0 1e+00 0 198 ( 5.09) 200 ( 0) 200 200 --->plink-------germline2: 1e+00 0 1e+00 0 198 ( 5.09) 200 ( 0) 200 200 --->plink-------dash-----: 1e+00 0 1e+00 0 198 ( 5.09) 0 ( 0) 200 0 --->germline1---germline2: 1e+00 0 1e+00 0 200 ( 0) 200 ( 0) 200 200 --->germline1---dash-----: 1e+00 0 1e+00 0 200 ( 0) 0 ( 0) 200 0 --->germline2---dash-----: 1e+00 0 1e+00 0 200 ( 0) 0 ( 0) 200 0 ######MatthewsSample###### --->fabia-------beagle1--: 3.02e-15 0.670628 5.29e-24 0.613040 0.764284 (0.405352) 0.151244 (0.211571) 1.000000 0.140028 --->fabia-------beagle2--: 2.4e-14 0.605830 3.47e-21 0.592538 0.764284 (0.405352) 0.171746 (0.267058) 1.000000 -0.043526 --->fabia-------plink----: 1.6e-02 0.280477 3.63e-04 0.145119 0.764284 (0.405352) 0.619165 (0.104136) 1.000000 0.609902 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.764284 (0.405352) 0.000000 (0.000000) 1.000000 0.000000 --->fabia-------germline2: 1e+00 0.000000 1e+00 0.000000 0.764284 (0.405352) 0.000000 (0.000000) 1.000000 0.000000 --->fabia-------dash-----: 9.48e-16 0.771448 3.98e-26 0.585808 0.764284 (0.405352) 0.178476 (0.007522) 1.000000 0.181818 --->beagle1-----beagle2--: 2.06e-01 -0.027549 3.07e-01 -0.020503 0.151244 (0.211571) 0.171746 (0.267058) 0.140028 -0.043526 --->beagle1-----plink----: 8.65e-18 -0.483896 3e-36 -0.467921 0.151244 (0.211571) 0.619165 (0.104136) 0.140028 0.609902 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.151244 (0.211571) 0.000000 (0.000000) 0.140028 0.000000 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 0.151244 (0.211571) 0.000000 (0.000000) 0.140028 0.000000 --->beagle1-----dash-----: 9.5e-02 -0.037012 2.04e-01 -0.027232 0.151244 (0.211571) 0.178476 (0.007522) 0.140028 0.181818 --->beagle2-----plink----: 2.04e-16 -0.455284 2.86e-27 -0.447419 0.171746 (0.267058) 0.619165 (0.104136) -0.043526 0.609902 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.171746 (0.267058) 0.000000 (0.000000) -0.043526 0.000000 --->beagle2-----germline2: 1e+00 0.000000 1e+00 0.000000 0.171746 (0.267058) 0.000000 (0.000000) -0.043526 0.000000 --->beagle2-----dash-----: 5.02e-01 0.008653 8.02e-01 -0.006729 0.171746 (0.267058) 0.178476 (0.007522) -0.043526 0.181818 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.619165 (0.104136) 0.000000 (0.000000) 0.609902 0.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 0.619165 (0.104136) 0.000000 (0.000000) 0.609902 0.000000 --->plink-------dash-----: 3.89e-18 0.434705 1.57e-65 0.440689 0.619165 (0.104136) 0.178476 (0.007522) 0.609902 0.181818 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.178476 (0.007522) 0.000000 0.181818 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.178476 (0.007522) 0.000000 0.181818 ######F1Sample###### --->fabia-------beagle1--: 3.63e-14 0.615898 2.55e-20 0.517769 0.761913 (0.407331) 0.244144 (0.177697) 1.000000 0.240000 --->fabia-------beagle2--: 1.56e-14 0.733312 7.94e-22 0.579550 0.761913 (0.407331) 0.182363 (0.219264) 1.000000 0.000000 --->fabia-------plink----: 2.28e-02 0.277790 5.8e-04 0.141237 0.761913 (0.407331) 0.620677 (0.104439) 1.000000 0.606061 --->fabia-------germline1: 2.63e-15 0.771014 7.17e-26 0.583438 0.761913 (0.407331) 0.178476 (0.007522) 1.000000 0.181818 --->fabia-------germline2: 2.63e-15 0.771014 7.17e-26 0.583438 0.761913 (0.407331) 0.178476 (0.007522) 1.000000 0.181818 --->fabia-------dash-----: 9.48e-16 0.849484 8.68e-30 0.663913 0.761913 (0.407331) 0.098000 (0.004495) 1.000000 0.100000 --->beagle1-----beagle2--: 9.8e-04 0.070394 2.81e-04 0.061781 0.244144 (0.177697) 0.182363 (0.219264) 0.240000 0.000000 --->beagle1-----plink----: 1.27e-17 -0.387863 2.27e-33 -0.376533 0.244144 (0.177697) 0.620677 (0.104439) 0.240000 0.606061 --->beagle1-----germline1: 4.02e-03 0.058603 3.89e-04 0.065668 0.244144 (0.177697) 0.178476 (0.007522) 0.240000 0.181818 --->beagle1-----germline2: 4.02e-03 0.058603 3.89e-04 0.065668 0.244144 (0.177697) 0.178476 (0.007522) 0.240000 0.181818 --->beagle1-----dash-----: 2.21e-11 0.140933 9.1e-13 0.146144 0.244144 (0.177697) 0.098000 (0.004495) 0.240000 0.100000 --->beagle2-----plink----: 3.37e-17 -0.452720 1.66e-31 -0.438314 0.182363 (0.219264) 0.620677 (0.104439) 0.000000 0.606061 --->beagle2-----germline1: 2.07e-01 -0.015148 8.6e-01 0.003887 0.182363 (0.219264) 0.178476 (0.007522) 0.000000 0.181818 --->beagle2-----germline2: 2.07e-01 -0.015148 8.6e-01 0.003887 0.182363 (0.219264) 0.178476 (0.007522) 0.000000 0.181818 --->beagle2-----dash-----: 1.26e-02 0.066676 2.21e-04 0.084363 0.182363 (0.219264) 0.098000 (0.004495) 0.000000 0.100000 --->plink-------germline1: 3.88e-18 0.433742 1.07e-65 0.442201 0.620677 (0.104439) 0.178476 (0.007522) 0.606061 0.181818 --->plink-------germline2: 3.88e-18 0.433742 1.07e-65 0.442201 0.620677 (0.104439) 0.178476 (0.007522) 0.606061 0.181818 --->plink-------dash-----: 3.88e-18 0.515178 2.08e-72 0.522677 0.620677 (0.104439) 0.098000 (0.004495) 0.606061 0.100000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.178476 (0.007522) 0.178476 (0.007522) 0.181818 0.181818 --->germline1---dash-----: 9.41e-21 0.081722 4.26e-143 0.080476 0.178476 (0.007522) 0.098000 (0.004495) 0.181818 0.100000 --->germline2---dash-----: 9.41e-21 0.081722 4.26e-143 0.080476 0.178476 (0.007522) 0.098000 (0.004495) 0.181818 0.100000 ######accuracySample###### --->fabia-------beagle1--: 3.89e-18 0.184994 6.02e-53 0.184700 0.987400 (0.020431) 0.802700 (0.055320) 1.000000 0.800000 --->fabia-------beagle2--: 7.21e-18 0.095037 9.17e-39 0.095100 0.987400 (0.020431) 0.892300 (0.038608) 1.000000 0.885000 --->fabia-------plink----: 6.71e-18 0.112557 6.01e-43 0.110000 0.987400 (0.020431) 0.877400 (0.046114) 1.000000 0.870000 --->fabia-------germline1: 8.58e-19 0.897486 1.32e-163 0.889400 0.987400 (0.020431) 0.098000 (0.004495) 1.000000 0.100000 --->fabia-------germline2: 8.58e-19 0.897486 1.32e-163 0.889400 0.987400 (0.020431) 0.098000 (0.004495) 1.000000 0.100000 --->fabia-------dash-----: 1e+00 0.000000 3.26e-10 -0.014822 0.987400 (0.020431) 1.002222 (0.004994) 1.000000 1.000000 --->beagle1-----beagle2--: 5.79e-17 -0.095078 2.08e-31 -0.089600 0.802700 (0.055320) 0.892300 (0.038608) 0.800000 0.885000 --->beagle1-----plink----: 1.34e-13 -0.079974 9.39e-18 -0.074700 0.802700 (0.055320) 0.877400 (0.046114) 0.800000 0.870000 --->beagle1-----germline1: 3.83e-18 0.704986 7.82e-111 0.704700 0.802700 (0.055320) 0.098000 (0.004495) 0.800000 0.100000 --->beagle1-----germline2: 3.83e-18 0.704986 7.82e-111 0.704700 0.802700 (0.055320) 0.098000 (0.004495) 0.800000 0.100000 --->beagle1-----dash-----: 3.88e-18 -0.199998 3.09e-59 -0.199522 0.802700 (0.055320) 1.002222 (0.004994) 0.800000 1.000000 --->beagle2-----plink----: 1.73e-02 0.015088 1.46e-02 0.014900 0.892300 (0.038608) 0.877400 (0.046114) 0.885000 0.870000 --->beagle2-----germline1: 2.58e-18 0.799980 1.59e-130 0.794300 0.892300 (0.038608) 0.098000 (0.004495) 0.885000 0.100000 --->beagle2-----germline2: 2.58e-18 0.799980 1.59e-130 0.794300 0.892300 (0.038608) 0.098000 (0.004495) 0.885000 0.100000 --->beagle2-----dash-----: 2.66e-18 -0.109930 1.58e-50 -0.109922 0.892300 (0.038608) 1.002222 (0.004994) 0.885000 1.000000 --->plink-------germline1: 3.77e-18 0.779942 5.83e-124 0.779400 0.877400 (0.046114) 0.098000 (0.004495) 0.870000 0.100000 --->plink-------germline2: 3.77e-18 0.779942 5.83e-124 0.779400 0.877400 (0.046114) 0.098000 (0.004495) 0.870000 0.100000 --->plink-------dash-----: 3.84e-18 -0.125075 7.26e-47 -0.124822 0.877400 (0.046114) 1.002222 (0.004994) 0.870000 1.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.098000 (0.004495) 0.098000 (0.004495) 0.100000 0.100000 --->germline1---dash-----: 9.41e-21 -0.900075 5.71e-198 -0.904222 0.098000 (0.004495) 1.002222 (0.004994) 0.100000 1.000000 --->germline2---dash-----: 9.41e-21 -0.900075 5.71e-198 -0.904222 0.098000 (0.004495) 1.002222 (0.004994) 0.100000 1.000000 ######FPRSample###### --->fabia-------beagle1--: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.147222 (0.051981) 0.000000 0.133333 --->fabia-------beagle2--: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.024556 (0.035147) 0.000000 0.022222 --->fabia-------plink----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.133000 (0.051063) 0.000000 0.138889 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 1.002222 (0.004994) 0.000000 1.000000 --->fabia-------germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 1.002222 (0.004994) 0.000000 1.000000 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.902000 (0.004495) 0.000000 0.900000 --->beagle1-----beagle2--: 3.83e-17 0.127781 1.8e-38 0.122667 0.147222 (0.051981) 0.024556 (0.035147) 0.133333 0.022222 --->beagle1-----plink----: 5.22e-02 0.016572 4.41e-02 0.014222 0.147222 (0.051981) 0.133000 (0.051063) 0.133333 0.138889 --->beagle1-----germline1: 3.82e-18 -0.855613 6.01e-122 -0.855000 0.147222 (0.051981) 1.002222 (0.004994) 0.133333 1.000000 --->beagle1-----germline2: 3.82e-18 -0.855613 6.01e-122 -0.855000 0.147222 (0.051981) 1.002222 (0.004994) 0.133333 1.000000 --->beagle1-----dash-----: 3.82e-18 -0.755528 1.11e-116 -0.754778 0.147222 (0.051981) 0.902000 (0.004495) 0.133333 0.900000 --->beagle2-----plink----: 4.05e-17 -0.111135 1.84e-33 -0.108444 0.024556 (0.035147) 0.133000 (0.051063) 0.022222 0.138889 --->beagle2-----germline1: 2.38e-18 -0.983363 8.01e-144 -0.977667 0.024556 (0.035147) 1.002222 (0.004994) 0.022222 1.000000 --->beagle2-----germline2: 2.38e-18 -0.983363 8.01e-144 -0.977667 0.024556 (0.035147) 1.002222 (0.004994) 0.022222 1.000000 --->beagle2-----dash-----: 2.38e-18 -0.882787 2.45e-139 -0.877444 0.024556 (0.035147) 0.902000 (0.004495) 0.022222 0.900000 --->plink-------germline1: 3.82e-18 -0.866752 2.51e-124 -0.869222 0.133000 (0.051063) 1.002222 (0.004994) 0.138889 1.000000 --->plink-------germline2: 3.82e-18 -0.866752 2.51e-124 -0.869222 0.133000 (0.051063) 1.002222 (0.004994) 0.138889 1.000000 --->plink-------dash-----: 3.82e-18 -0.766695 4.61e-119 -0.769000 0.133000 (0.051063) 0.902000 (0.004495) 0.138889 0.900000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 1.002222 (0.004994) 1.002222 (0.004994) 1.000000 1.000000 --->germline1---dash-----: 9.41e-21 0.100063 5.42e-230 0.100222 1.002222 (0.004994) 0.902000 (0.004495) 1.000000 0.900000 --->germline2---dash-----: 9.41e-21 0.100063 5.42e-230 0.100222 1.002222 (0.004994) 0.902000 (0.004495) 1.000000 0.900000 ######FDRSample###### --->fabia-------beagle1--: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.803017 (0.141134) 0.000000 0.816498 --->fabia-------beagle2--: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.613231 (0.449059) 0.000000 1.000000 --->fabia-------plink----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.535038 (0.117103) 0.000000 0.565217 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.902000 (0.004495) 0.000000 0.900000 --->fabia-------germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.902000 (0.004495) 0.000000 0.900000 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----beagle2--: 9.03e-05 0.246803 3.31e-06 0.189785 0.803017 (0.141134) 0.613231 (0.449059) 0.816498 1.000000 --->beagle1-----plink----: 1.47e-16 0.272974 1.41e-26 0.267979 0.803017 (0.141134) 0.535038 (0.117103) 0.816498 0.565217 --->beagle1-----germline1: 8.56e-09 -0.094533 3.41e-10 -0.098983 0.803017 (0.141134) 0.902000 (0.004495) 0.816498 0.900000 --->beagle1-----germline2: 8.56e-09 -0.094533 3.41e-10 -0.098983 0.803017 (0.141134) 0.902000 (0.004495) 0.816498 0.900000 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.803017 (0.141134) 0.000000 (0.000000) 0.816498 0.000000 --->beagle2-----plink----: 3.1e-01 0.049460 1.05e-01 0.078194 0.613231 (0.449059) 0.535038 (0.117103) 1.000000 0.565217 --->beagle2-----germline1: 2.4e-04 -0.399939 4.66e-09 -0.288769 0.613231 (0.449059) 0.902000 (0.004495) 1.000000 0.900000 --->beagle2-----germline2: 2.4e-04 -0.399939 4.66e-09 -0.288769 0.613231 (0.449059) 0.902000 (0.004495) 1.000000 0.900000 --->beagle2-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.613231 (0.449059) 0.000000 (0.000000) 1.000000 0.000000 --->plink-------germline1: 3.89e-18 -0.352618 1.9e-53 -0.366962 0.535038 (0.117103) 0.902000 (0.004495) 0.565217 0.900000 --->plink-------germline2: 3.89e-18 -0.352618 1.9e-53 -0.366962 0.535038 (0.117103) 0.902000 (0.004495) 0.565217 0.900000 --->plink-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.535038 (0.117103) 0.000000 (0.000000) 0.565217 0.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.902000 (0.004495) 0.902000 (0.004495) 0.900000 0.900000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.902000 (0.004495) 0.000000 (0.000000) 0.900000 0.000000 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 0.902000 (0.004495) 0.000000 (0.000000) 0.900000 0.000000 ######specifitySample###### --->fabia-------beagle1--: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.855000 (0.052672) 1.000000 0.866667 --->fabia-------beagle2--: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.977667 (0.036168) 1.000000 0.977778 --->fabia-------plink----: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.869222 (0.050656) 1.000000 0.866667 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.000000 (0.000000) 1.000000 0.000000 --->fabia-------germline2: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.000000 (0.000000) 1.000000 0.000000 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.980000 (0.044947) 1.000000 1.000000 --->beagle1-----beagle2--: 3.78e-17 -0.127790 1.8e-38 -0.122667 0.855000 (0.052672) 0.977667 (0.036168) 0.866667 0.977778 --->beagle1-----plink----: 1e+00 0.000000 4.41e-02 -0.014222 0.855000 (0.052672) 0.869222 (0.050656) 0.866667 0.866667 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.855000 (0.052672) 0.000000 (0.000000) 0.866667 0.000000 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 0.855000 (0.052672) 0.000000 (0.000000) 0.866667 0.000000 --->beagle1-----dash-----: 5.56e-17 -0.127826 2.3e-30 -0.125000 0.855000 (0.052672) 0.980000 (0.044947) 0.866667 1.000000 --->beagle2-----plink----: 3.7e-17 0.111169 1.84e-33 0.108444 0.977667 (0.036168) 0.869222 (0.050656) 0.977778 0.866667 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.977667 (0.036168) 0.000000 (0.000000) 0.977778 0.000000 --->beagle2-----germline2: 1e+00 0.000000 1e+00 0.000000 0.977667 (0.036168) 0.000000 (0.000000) 0.977778 0.000000 --->beagle2-----dash-----: 7.52e-02 -0.022222 7.2e-01 -0.002333 0.977667 (0.036168) 0.980000 (0.044947) 0.977778 1.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.869222 (0.050656) 0.000000 (0.000000) 0.866667 0.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 0.869222 (0.050656) 0.000000 (0.000000) 0.866667 0.000000 --->plink-------dash-----: 6.43e-17 -0.116718 2.03e-30 -0.110778 0.869222 (0.050656) 0.980000 (0.044947) 0.866667 1.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.980000 (0.044947) 0.000000 1.000000 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.980000 (0.044947) 0.000000 1.000000 ######sensitivitySample###### --->fabia-------beagle1--: 6.76e-11 0.549974 2.13e-13 0.416000 0.748000 (0.408614) 0.332000 (0.256582) 1.000000 0.300000 --->fabia-------beagle2--: 3.15e-15 0.800046 1.89e-25 0.624000 0.748000 (0.408614) 0.124000 (0.154475) 1.000000 0.000000 --->fabia-------plink----: 1e+00 0.000000 1.43e-06 -0.203000 0.748000 (0.408614) 0.951000 (0.082260) 1.000000 1.000000 --->fabia-------germline1: 1e+00 0.000000 1.44e-07 -0.232000 0.748000 (0.408614) 0.980000 (0.044947) 1.000000 1.000000 --->fabia-------germline2: 1e+00 0.000000 1.44e-07 -0.232000 0.748000 (0.408614) 0.980000 (0.044947) 1.000000 1.000000 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.748000 (0.408614) 0.000000 (0.000000) 1.000000 0.000000 --->beagle1-----beagle2--: 4.85e-14 0.250070 2.32e-18 0.208000 0.332000 (0.256582) 0.124000 (0.154475) 0.300000 0.000000 --->beagle1-----plink----: 7.46e-18 -0.649992 4.11e-42 -0.619000 0.332000 (0.256582) 0.951000 (0.082260) 0.300000 1.000000 --->beagle1-----germline1: 7.3e-18 -0.650015 3.96e-44 -0.648000 0.332000 (0.256582) 0.980000 (0.044947) 0.300000 1.000000 --->beagle1-----germline2: 7.3e-18 -0.650015 3.96e-44 -0.648000 0.332000 (0.256582) 0.980000 (0.044947) 0.300000 1.000000 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.332000 (0.256582) 0.000000 (0.000000) 0.300000 0.000000 --->beagle2-----plink----: 2.3e-18 -0.849967 9e-69 -0.827000 0.124000 (0.154475) 0.951000 (0.082260) 0.000000 1.000000 --->beagle2-----germline1: 1.62e-18 -0.899978 1.66e-73 -0.856000 0.124000 (0.154475) 0.980000 (0.044947) 0.000000 1.000000 --->beagle2-----germline2: 1.62e-18 -0.899978 1.66e-73 -0.856000 0.124000 (0.154475) 0.980000 (0.044947) 0.000000 1.000000 --->beagle2-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.124000 (0.154475) 0.000000 (0.000000) 0.000000 0.000000 --->plink-------germline1: 1e+00 0.000000 1.32e-04 -0.029000 0.951000 (0.082260) 0.980000 (0.044947) 1.000000 1.000000 --->plink-------germline2: 1e+00 0.000000 1.32e-04 -0.029000 0.951000 (0.082260) 0.980000 (0.044947) 1.000000 1.000000 --->plink-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.951000 (0.082260) 0.000000 (0.000000) 1.000000 0.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.980000 (0.044947) 0.980000 (0.044947) 1.000000 1.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.980000 (0.044947) 0.000000 (0.000000) 1.000000 0.000000 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 0.980000 (0.044947) 0.000000 (0.000000) 1.000000 0.000000 ######trueNSample###### --->fabia-------beagle1--: 1e+00 0 1e+00 0 190 ( 0) 77 ( 4.74) 190 78 --->fabia-------beagle2--: 1e+00 0 1e+00 0 190 ( 0) 88 ( 3.26) 190 88 --->fabia-------plink----: 1e+00 0 1e+00 0 190 ( 0) 78.2 ( 4.56) 190 78 --->fabia-------germline1: 1e+00 0 1e+00 0 190 ( 0) 0 ( 0) 190 0 --->fabia-------germline2: 1e+00 0 1e+00 0 190 ( 0) 0 ( 0) 190 0 --->fabia-------dash-----: 1e+00 0 1e+00 0 190 ( 0) 90.2 ( 0.449) 190 90 --->beagle1-----beagle2--: 3.66e-17 -11.5 1.8e-38 -11 77 ( 4.74) 88 ( 3.26) 78 88 --->beagle1-----plink----: 1e+00 0 4.41e-02 -1.28 77 ( 4.74) 78.2 ( 4.56) 78 78 --->beagle1-----germline1: 1e+00 0 1e+00 0 77 ( 4.74) 0 ( 0) 78 0 --->beagle1-----germline2: 1e+00 0 1e+00 0 77 ( 4.74) 0 ( 0) 78 0 --->beagle1-----dash-----: 3.75e-18 -13 2.81e-49 -13.2 77 ( 4.74) 90.2 ( 0.449) 78 90 --->beagle2-----plink----: 4.21e-17 10 1.84e-33 9.76 88 ( 3.26) 78.2 ( 4.56) 88 78 --->beagle2-----germline1: 1e+00 0 1e+00 0 88 ( 3.26) 0 ( 0) 88 0 --->beagle2-----germline2: 1e+00 0 1e+00 0 88 ( 3.26) 0 ( 0) 88 0 --->beagle2-----dash-----: 1.1e-13 -2 3.3e-10 -2.21 88 ( 3.26) 90.2 ( 0.449) 88 90 --->plink-------germline1: 1e+00 0 1e+00 0 78.2 ( 4.56) 0 ( 0) 78 0 --->plink-------germline2: 1e+00 0 1e+00 0 78.2 ( 4.56) 0 ( 0) 78 0 --->plink-------dash-----: 3.74e-18 -12 4.26e-46 -12 78.2 ( 4.56) 90.2 ( 0.449) 78 90 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0 1e+00 0 0 ( 0) 90.2 ( 0.449) 0 90 --->germline2---dash-----: 1e+00 0 1e+00 0 0 ( 0) 90.2 ( 0.449) 0 90 ######falsePSample###### --->fabia-------beagle1--: 1e+00 0 1e+00 0 0 ( 0) 13.2 ( 4.68) 0 12 --->fabia-------beagle2--: 1e+00 0 1e+00 0 0 ( 0) 2.21 ( 3.16) 0 2 --->fabia-------plink----: 1e+00 0 1e+00 0 0 ( 0) 12 ( 4.6) 0 12.5 --->fabia-------germline1: 1e+00 0 1e+00 0 0 ( 0) 90.2 ( 0.449) 0 90 --->fabia-------germline2: 1e+00 0 1e+00 0 0 ( 0) 90.2 ( 0.449) 0 90 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----beagle2--: 3.66e-17 11.5 1.8e-38 11 13.2 ( 4.68) 2.21 ( 3.16) 12 2 --->beagle1-----plink----: 4.34e-02 1.5 4.41e-02 1.28 13.2 ( 4.68) 12 ( 4.6) 12 12.5 --->beagle1-----germline1: 3.75e-18 -77 6.01e-122 -77 13.2 ( 4.68) 90.2 ( 0.449) 12 90 --->beagle1-----germline2: 3.75e-18 -77 6.01e-122 -77 13.2 ( 4.68) 90.2 ( 0.449) 12 90 --->beagle1-----dash-----: 1e+00 0 1e+00 0 13.2 ( 4.68) 0 ( 0) 12 0 --->beagle2-----plink----: 4.21e-17 -10 1.84e-33 -9.76 2.21 ( 3.16) 12 ( 4.6) 2 12.5 --->beagle2-----germline1: 2.22e-18 -88.5 8.01e-144 -88 2.21 ( 3.16) 90.2 ( 0.449) 2 90 --->beagle2-----germline2: 2.22e-18 -88.5 8.01e-144 -88 2.21 ( 3.16) 90.2 ( 0.449) 2 90 --->beagle2-----dash-----: 1e+00 0 1e+00 0 2.21 ( 3.16) 0 ( 0) 2 0 --->plink-------germline1: 3.73e-18 -78 2.51e-124 -78.2 12 ( 4.6) 90.2 ( 0.449) 12.5 90 --->plink-------germline2: 3.73e-18 -78 2.51e-124 -78.2 12 ( 4.6) 90.2 ( 0.449) 12.5 90 --->plink-------dash-----: 1e+00 0 1e+00 0 12 ( 4.6) 0 ( 0) 12.5 0 --->germline1---germline2: 1e+00 0 1e+00 0 90.2 ( 0.449) 90.2 ( 0.449) 90 90 --->germline1---dash-----: 1e+00 0 1e+00 0 90.2 ( 0.449) 0 ( 0) 90 0 --->germline2---dash-----: 1e+00 0 1e+00 0 90.2 ( 0.449) 0 ( 0) 90 0 ######falseNSample###### --->fabia-------beagle1--: 2.39e-10 -4.5 2.29e-12 -3.96 2.52 ( 4.09) 6.48 ( 2.62) 0 7 --->fabia-------beagle2--: 6.3e-15 -8 3.55e-24 -6.04 2.52 ( 4.09) 8.56 ( 1.65) 0 9 --->fabia-------plink----: 1e+00 0.000000 1.61e-07 2.230000 2.520000 (4.086143) 0.290000 (0.728843) 0.000000 0.000000 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 2.520000 (4.086143) 0.000000 (0.000000) 0.000000 0.000000 --->fabia-------germline2: 1e+00 0.000000 1e+00 0.000000 2.520000 (4.086143) 0.000000 (0.000000) 0.000000 0.000000 --->fabia-------dash-----: 5.95e-16 -9.5 2.53e-32 -7.28 2.52 ( 4.09) 9.8 ( 0.449) 0 10 --->beagle1-----beagle2--: 3.84e-14 -2.5 2.32e-18 -2.08 6.48 ( 2.62) 8.56 ( 1.65) 7 9 --->beagle1-----plink----: 7.24e-18 6.5 4.11e-42 6.19 6.48 ( 2.62) 0.29 ( 0.729) 7 0 --->beagle1-----germline1: 1e+00 0 1e+00 0 6.48 ( 2.62) 0 ( 0) 7 0 --->beagle1-----germline2: 1e+00 0 1e+00 0 6.48 ( 2.62) 0 ( 0) 7 0 --->beagle1-----dash-----: 6.85e-16 -3.5 5.24e-23 -3.32 6.48 ( 2.62) 9.8 ( 0.449) 7 10 --->beagle2-----plink----: 2.3e-18 8.5 9e-69 8.27 8.56 ( 1.65) 0.29 ( 0.729) 9 0 --->beagle2-----germline1: 1e+00 0 1e+00 0 8.56 ( 1.65) 0 ( 0) 9 0 --->beagle2-----germline2: 1e+00 0 1e+00 0 8.56 ( 1.65) 0 ( 0) 9 0 --->beagle2-----dash-----: 6.63e-10 -2.5 2.1e-12 -1.24 8.56 ( 1.65) 9.8 ( 0.449) 9 10 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.290000 (0.728843) 0.000000 (0.000000) 0.000000 0.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 0.290000 (0.728843) 0.000000 (0.000000) 0.000000 0.000000 --->plink-------dash-----: 2.05e-19 -9.5 1.97e-107 -9.51 0.29 ( 0.729) 9.8 ( 0.449) 0 10 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0 1e+00 0 0 ( 0) 9.8 ( 0.449) 0 10 --->germline2---dash-----: 1e+00 0 1e+00 0 0 ( 0) 9.8 ( 0.449) 0 10 ######truePSample###### --->fabia-------beagle1--: 6.9e-11 5.5 2.13e-13 4.16 7.48 ( 4.09) 3.32 ( 2.57) 10 3 --->fabia-------beagle2--: 2.94e-15 8 1.89e-25 6.24 7.48 ( 4.09) 1.24 ( 1.54) 10 0 --->fabia-------plink----: 1e+00 0 1.43e-06 -2.03 7.48 ( 4.09) 9.51 ( 0.823) 10 10 --->fabia-------germline1: 1e+00 0 1.44e-07 -2.32 7.48 ( 4.09) 9.8 ( 0.449) 10 10 --->fabia-------germline2: 1e+00 0 1.44e-07 -2.32 7.48 ( 4.09) 9.8 ( 0.449) 10 10 --->fabia-------dash-----: 3.87e-18 -660 4.58e-188 -660 7.48 ( 4.09) 668 ( 8.28) 10 668 --->beagle1-----beagle2--: 3.84e-14 2.5 2.32e-18 2.08 3.32 ( 2.57) 1.24 ( 1.54) 3 0 --->beagle1-----plink----: 7.24e-18 -6.5 4.11e-42 -6.19 3.32 ( 2.57) 9.51 ( 0.823) 3 10 --->beagle1-----germline1: 7.27e-18 -6.5 3.96e-44 -6.48 3.32 ( 2.57) 9.8 ( 0.449) 3 10 --->beagle1-----germline2: 7.27e-18 -6.5 3.96e-44 -6.48 3.32 ( 2.57) 9.8 ( 0.449) 3 10 --->beagle1-----dash-----: 3.88e-18 -664 1.25e-189 -664 3.32 ( 2.57) 668 ( 8.28) 3 668 --->beagle2-----plink----: 2.3e-18 -8.5 9e-69 -8.27 1.24 ( 1.54) 9.51 ( 0.823) 0 10 --->beagle2-----germline1: 1.62e-18 -9 1.66e-73 -8.56 1.24 ( 1.54) 9.8 ( 0.449) 0 10 --->beagle2-----germline2: 1.62e-18 -9 1.66e-73 -8.56 1.24 ( 1.54) 9.8 ( 0.449) 0 10 --->beagle2-----dash-----: 3.89e-18 -666 1.69e-191 -666 1.24 ( 1.54) 668 ( 8.28) 0 668 --->plink-------germline1: 1e+00 0 1.32e-04 -0.29 9.51 ( 0.823) 9.8 ( 0.449) 10 10 --->plink-------germline2: 1e+00 0 1.32e-04 -0.29 9.51 ( 0.823) 9.8 ( 0.449) 10 10 --->plink-------dash-----: 3.86e-18 -658 1.23e-190 -658 9.51 ( 0.823) 668 ( 8.28) 10 668 --->germline1---germline2: 1e+00 0 1e+00 0 9.8 ( 0.449) 9.8 ( 0.449) 10 10 --->germline1---dash-----: 3.86e-18 -658 4.08e-190 -658 9.8 ( 0.449) 668 ( 8.28) 10 668 --->germline2---dash-----: 3.86e-18 -658 4.08e-190 -658 9.8 ( 0.449) 668 ( 8.28) 10 668