Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:27 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim1beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:33 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim2beagle.txt) Running time for phasing: 47 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:38 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim3beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim3beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:44 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim4beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim4beagle.txt) Running time for phasing: 47 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:50 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim5beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim5beagle.txt) Running time for phasing: 47 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:56 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim6beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim6beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:01 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim7beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim7beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:07 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim8beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim8beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:13 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim9beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim9beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:19 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim10beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim10beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:26 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim11beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim11beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:32 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim12beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim12beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:38 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim13beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim13beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:44 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim14beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim14beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:50 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim15beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim15beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:56 PM CET on 29 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim16beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim16beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:03 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim17beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim17beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:09 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim18beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim18beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:14 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim19beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim19beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:20 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim20beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim20beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:26 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim21beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim21beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:32 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim22beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim22beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:39 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim23beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim23beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:45 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim24beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim24beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:51 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim25beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim25beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:57 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim26beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim26beagle.txt) Running time for phasing: 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:04 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim27beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim27beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:10 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim28beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim28beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:16 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim29beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim29beagle.txt) Running time for phasing: 49 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:21 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim30beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim30beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:27 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim31beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim31beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:33 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim32beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim32beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:39 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim33beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim33beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:46 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim34beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim34beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:52 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim35beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim35beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:59 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim36beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim36beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:05 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim37beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim37beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:11 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim38beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim38beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:17 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim39beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim39beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:22 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim40beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim40beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:28 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim41beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim41beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:34 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim42beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim42beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:40 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim43beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim43beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:46 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim44beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim44beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:51 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim45beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim45beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:57 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim46beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim46beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:03 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim47beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim47beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:09 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim48beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim48beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:14 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim49beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim49beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:21 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim50beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim50beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:26 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim51beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim51beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:32 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim52beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim52beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:38 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim53beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim53beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:44 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim54beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim54beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:52 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim55beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim55beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:58 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim56beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim56beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:03 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim57beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim57beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:09 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim58beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim58beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:15 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim59beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim59beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:21 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim60beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim60beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:27 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim61beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim61beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:33 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim62beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim62beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:38 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim63beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim63beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:44 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim64beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim64beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:50 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim65beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim65beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:56 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim66beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim66beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:02 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim67beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim67beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:08 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim68beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim68beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:13 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim69beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim69beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:19 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim70beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim70beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:25 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim71beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim71beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:31 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim72beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim72beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:37 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim73beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim73beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:42 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim74beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim74beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:48 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim75beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim75beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:55 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim76beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim76beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:01 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim77beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim77beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:07 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim78beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim78beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:13 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim79beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim79beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:18 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim80beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim80beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:24 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim81beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim81beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:32 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim82beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim82beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:38 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim83beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim83beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:43 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim84beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim84beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:49 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim85beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim85beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:55 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim86beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim86beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:01 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim87beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim87beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:07 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim88beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim88beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:13 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim89beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim89beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:19 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim90beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim90beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:25 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim91beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim91beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:30 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim92beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim92beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:37 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim93beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim93beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:43 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim94beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim94beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:50 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim95beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim95beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:56 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim96beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim96beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:02 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim97beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim97beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:08 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim98beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim98beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:14 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim99beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim99beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:20 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim100beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim100beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:21 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim1beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:25 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim1beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:31 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim2beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:36 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim3beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim3beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:40 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim1beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:45 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim2beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:49 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim3beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim3beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:54 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim4beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim4beagle.txt) Running time for phasing: 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:01 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim5beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim5beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:05 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim6beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim6beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:10 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim7beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim7beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:15 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim8beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim8beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:20 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim9beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim9beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:24 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim10beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim10beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:29 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim11beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim11beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:35 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim12beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim12beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:40 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim13beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim13beagle.txt) Running time for phasing: 56 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:45 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim14beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim14beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:50 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim15beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim15beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:55 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim16beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim16beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:00 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim17beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim17beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:04 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim18beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim18beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:11 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim19beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim19beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:15 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim20beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim20beagle.txt) Running time for phasing: 47 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:20 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim21beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim21beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:25 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim22beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim22beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:30 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim23beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim23beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:34 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim24beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim24beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:39 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim25beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim25beagle.txt) Running time for phasing: 50 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:44 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim26beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim26beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:50 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim27beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim27beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:55 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim28beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim28beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:59 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim29beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim29beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:06 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim30beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim30beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:10 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim31beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim31beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:15 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim32beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim32beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:20 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim33beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim33beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:26 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim34beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim34beagle.txt) Running time for phasing: 51 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:30 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim35beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim35beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:35 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim36beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim36beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:41 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim37beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim37beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:46 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim38beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim38beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:51 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim39beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim39beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:55 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim40beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim40beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:00 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim41beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim41beagle.txt) Running time for phasing: 50 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:05 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim42beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim42beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:10 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim43beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim43beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:14 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim44beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim44beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:19 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim45beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim45beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:24 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim46beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim46beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:28 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim47beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim47beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:33 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim48beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim48beagle.txt) Running time for phasing: 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:38 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim49beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim49beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:44 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim50beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim50beagle.txt) Running time for phasing: 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:49 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim51beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim51beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:54 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim52beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim52beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:58 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim53beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim53beagle.txt) Running time for phasing: 49 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:03 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim54beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim54beagle.txt) Running time for phasing: 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:08 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim55beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim55beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:13 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim56beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim56beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:18 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim57beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim57beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:23 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim58beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim58beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:27 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim59beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim59beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:33 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim60beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim60beagle.txt) Running time for phasing: 48 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:38 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim61beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim61beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:44 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim62beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim62beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:49 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim63beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim63beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:54 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim64beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim64beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:59 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim65beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim65beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:04 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim66beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim66beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:09 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim67beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim67beagle.txt) Running time for phasing: 51 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:15 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim68beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim68beagle.txt) Running time for phasing: 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:20 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim69beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim69beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:25 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim70beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim70beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:29 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim71beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim71beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:36 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim72beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim72beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:41 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim73beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim73beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:46 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim74beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim74beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:52 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim75beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim75beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:58 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim76beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim76beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:03 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim77beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim77beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:09 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim78beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim78beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:14 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim79beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim79beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:18 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim80beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim80beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:25 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim81beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim81beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:31 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim82beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim82beagle.txt) Running time for phasing: 53 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:37 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim83beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim83beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:42 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim84beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim84beagle.txt) Running time for phasing: 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:47 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim85beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim85beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:51 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim86beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim86beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:56 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim87beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim87beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:01 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim88beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim88beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:06 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim89beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim89beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:10 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim90beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim90beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:15 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim91beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim91beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:23 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim1beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:27 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim2beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:32 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim3beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim3beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:37 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim4beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim4beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:43 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim5beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim5beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:48 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim6beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim6beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:53 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim7beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim7beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:57 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim8beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim8beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:02 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim9beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim9beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:07 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim10beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim10beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:12 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim11beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim11beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:18 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim12beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim12beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:23 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim13beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim13beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:27 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim14beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim14beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:32 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim15beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim15beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:37 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim16beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim16beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:42 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim17beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim17beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:46 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim18beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim18beagle.txt) Running time for phasing: 47 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:52 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim19beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim19beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:57 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim20beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim20beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:02 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim21beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim21beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:07 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim22beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim22beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:11 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim23beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim23beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:16 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim24beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim24beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:21 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim25beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim25beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:25 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim26beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim26beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:31 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim27beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim27beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:36 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim28beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim28beagle.txt) Running time for phasing: 47 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:41 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim29beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim29beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:47 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim30beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim30beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:51 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim31beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim31beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:56 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim32beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim32beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:01 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim33beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim33beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:07 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim34beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim34beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:12 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim35beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim35beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:16 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim36beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim36beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:22 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim37beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim37beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:27 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim38beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim38beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:32 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim39beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim39beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:37 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim40beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim40beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:41 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim41beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim41beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:46 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim42beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim42beagle.txt) Running time for phasing: 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:51 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim43beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim43beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:56 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim44beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim44beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:00 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim45beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim45beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:05 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim46beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim46beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:10 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim47beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim47beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:15 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim48beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim48beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:19 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim49beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim49beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:25 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim50beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim50beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:30 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim51beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim51beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:35 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim52beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim52beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:39 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim53beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim53beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:44 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim54beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim54beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:49 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim55beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim55beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:54 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim56beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim56beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:58 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim57beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim57beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:03 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim58beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim58beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:08 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim59beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim59beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:14 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim60beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim60beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:19 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim61beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim61beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:25 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim62beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim62beagle.txt) Running time for phasing: 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:29 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim63beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim63beagle.txt) Running time for phasing: 47 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:34 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim64beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim64beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:38 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim65beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim65beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:43 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim66beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim66beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:48 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim67beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim67beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:54 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim68beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim68beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:59 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim69beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim69beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:03 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim70beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim70beagle.txt) Running time for phasing: 57 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:08 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim71beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim71beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:14 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim72beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim72beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:19 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim73beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim73beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:24 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim74beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim74beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:30 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim75beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim75beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:36 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim76beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim76beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:41 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim77beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim77beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:47 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim78beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim78beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:51 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim79beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim79beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:56 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim80beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim80beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:02 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim81beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim81beagle.txt) Running time for phasing: 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:08 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim82beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim82beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:14 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim83beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim83beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:19 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim84beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim84beagle.txt) Running time for phasing: 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:24 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim85beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim85beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:29 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim86beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim86beagle.txt) Running time for phasing: 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:34 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim87beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim87beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:38 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim88beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim88beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:43 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim89beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim89beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:48 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim90beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim90beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:52 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim91beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim91beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:58 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim92beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim92beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:03 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim93beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim93beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:08 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim94beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim94beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:14 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim95beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim95beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:18 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim96beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim96beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:23 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim97beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim97beagle.txt) Running time for phasing: 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:29 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim98beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim98beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:34 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim99beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim99beagle.txt) Running time for phasing: 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:39 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim100beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 200 (dataSim100beagle.txt) Running time for phasing: 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished