Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:11 AM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim1beagle.txt) Running time for phasing: 41 minutes 14 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:24 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim2beagle.txt) Running time for phasing: 43 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:49 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim1beagle.txt) Running time for phasing: 42 minutes 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:00 PM CET on 30 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim2beagle.txt) Running time for phasing: 41 minutes 11 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:10 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim3beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim3beagle.txt) Running time for phasing: 38 minutes 18 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:17 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim4beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim4beagle.txt) Running time for phasing: 38 minutes 57 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:32 AM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim1beagle.txt) Running time for phasing: 41 minutes 15 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:16 PM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim2beagle.txt) Running time for phasing: 40 minutes 10 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:32 PM CET on 31 Dec 2011 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim1beagle.txt) Running time for phasing: 42 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:19 AM CET on 01 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim2beagle.txt) Running time for phasing: 39 minutes 19 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:57 AM CET on 01 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim3beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim3beagle.txt) Running time for phasing: 36 minutes 58 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:32 PM CET on 01 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim4beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim4beagle.txt) Running time for phasing: 39 minutes 28 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:11 PM CET on 01 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim5beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim5beagle.txt) Running time for phasing: 46 minutes 17 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:18 AM CET on 02 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim6beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim6beagle.txt) Running time for phasing: 46 minutes 34 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:26 AM CET on 02 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim7beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim7beagle.txt) Running time for phasing: 50 minutes 51 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:14 PM CET on 02 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim8beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim8beagle.txt) Running time for phasing: 46 minutes 25 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:33 PM CET on 02 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim9beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim9beagle.txt) Running time for phasing: 37 minutes 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:04 AM CET on 03 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim10beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim10beagle.txt) Running time for phasing: 37 minutes 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:43 PM CET on 03 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim11beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim11beagle.txt) Running time for phasing: 42 minutes 16 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:29 PM CET on 03 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim12beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim12beagle.txt) Running time for phasing: 38 minutes 38 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:40 AM CET on 04 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim13beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim13beagle.txt) Running time for phasing: 37 minutes 4 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:45 AM CET on 04 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim14beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim14beagle.txt) Running time for phasing: 40 minutes 29 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:54 AM CET on 04 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim15beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim15beagle.txt) Running time for phasing: 40 minutes 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:03 PM CET on 04 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim16beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim16beagle.txt) Running time for phasing: 42 minutes 16 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:14 PM CET on 04 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim17beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim17beagle.txt) Running time for phasing: 39 minutes 56 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:22 AM CET on 05 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim18beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim18beagle.txt) Running time for phasing: 40 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:37 AM CET on 05 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim19beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim19beagle.txt) Running time for phasing: 42 minutes 58 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:52 PM CET on 05 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim20beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim20beagle.txt) Running time for phasing: 39 minutes 47 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:57 PM CET on 05 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim21beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim21beagle.txt) Running time for phasing: 42 minutes 18 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:05 AM CET on 06 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim22beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim22beagle.txt) Running time for phasing: 41 minutes 49 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:19 AM CET on 06 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim23beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim23beagle.txt) Running time for phasing: 41 minutes 55 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:04 PM CET on 06 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim24beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim24beagle.txt) Running time for phasing: 41 minutes 16 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:53 PM CET on 06 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim25beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim25beagle.txt) Running time for phasing: 39 minutes 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:02 AM CET on 07 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim26beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim26beagle.txt) Running time for phasing: 40 minutes 57 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:48 AM CET on 07 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim27beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim27beagle.txt) Running time for phasing: 37 minutes 12 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:27 PM CET on 07 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim28beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim28beagle.txt) Running time for phasing: 42 minutes 4 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:41 PM CET on 07 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim29beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim29beagle.txt) Running time for phasing: 44 minutes 18 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:55 PM CET on 07 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim30beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim30beagle.txt) Running time for phasing: 44 minutes 14 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:10 AM CET on 08 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim31beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim31beagle.txt) Running time for phasing: 41 minutes 3 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:21 AM CET on 08 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim32beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim32beagle.txt) Running time for phasing: 43 minutes 23 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:36 PM CET on 08 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim33beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim33beagle.txt) Running time for phasing: 42 minutes 25 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:52 PM CET on 08 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim34beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim34beagle.txt) Running time for phasing: 43 minutes 9 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:08 AM CET on 09 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim35beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim35beagle.txt) Running time for phasing: 41 minutes 58 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:23 AM CET on 09 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim36beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim36beagle.txt) Running time for phasing: 36 minutes 26 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:31 PM CET on 09 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim51beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim51beagle.txt) Running time for phasing: 43 minutes 4 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:31 PM CET on 09 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim36beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim36beagle.txt) Running time for phasing: 44 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:35 PM CET on 09 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim85beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim85beagle.txt) Running time for phasing: 44 minutes 55 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:35 PM CET on 09 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim68beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim68beagle.txt) Running time for phasing: 44 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:38 AM CET on 10 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim36beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim36beagle.txt) Running time for phasing: 42 minutes 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:32 AM CET on 10 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim37beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim37beagle.txt) Running time for phasing: 44 minutes 51 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:12 PM CET on 10 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim38beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim38beagle.txt) Running time for phasing: 49 minutes 12 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:51 PM CET on 10 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim39beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim39beagle.txt) Running time for phasing: 43 minutes 11 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:28 AM CET on 11 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim40beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim40beagle.txt) Running time for phasing: 39 minutes 24 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:57 AM CET on 11 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim41beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim41beagle.txt) Running time for phasing: 45 minutes 51 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:39 AM CET on 11 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim42beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim42beagle.txt) Running time for phasing: 45 minutes 14 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:08 PM CET on 11 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim43beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim43beagle.txt) Running time for phasing: 43 minutes 58 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:43 PM CET on 11 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim44beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim44beagle.txt) Running time for phasing: 48 minutes 56 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:19 AM CET on 12 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim45beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim45beagle.txt) Running time for phasing: 44 minutes 3 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:52 AM CET on 12 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim46beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim46beagle.txt) Running time for phasing: 41 minutes 22 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:52 PM CET on 12 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim47beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim47beagle.txt) Running time for phasing: 45 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:16 PM CET on 12 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim48beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim48beagle.txt) Running time for phasing: 41 minutes 31 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:55 AM CET on 13 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim49beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim49beagle.txt) Running time for phasing: 1 hours 17 minutes 52 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:05 PM CET on 13 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim50beagle.txt fastibd=true missing=N out=beagleres.txt number of markers = 10000 number of haplotypes = 2000 (dataSim50beagle.txt) Running time for phasing: 2 hours 51 minutes 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished