Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:37 AM CET on 10 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim81beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim81beagle.txt) Running time for phasing: 39 minutes 24 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:12 AM CET on 10 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim82beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim82beagle.txt) Running time for phasing: 41 minutes 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:46 PM CET on 10 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim83beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim83beagle.txt) Running time for phasing: 44 minutes 26 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:14 PM CET on 10 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim84beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim84beagle.txt) Running time for phasing: 40 minutes 8 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:56 PM CET on 10 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim85beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim85beagle.txt) Running time for phasing: 43 minutes 28 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:28 AM CET on 11 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim86beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim86beagle.txt) Running time for phasing: 44 minutes 18 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:57 AM CET on 11 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim87beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim87beagle.txt) Running time for phasing: 40 minutes 24 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:22 PM CET on 11 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim88beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim88beagle.txt) Running time for phasing: 46 minutes 19 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:58 PM CET on 11 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim89beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim89beagle.txt) Running time for phasing: 44 minutes 21 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:31 AM CET on 12 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim90beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim90beagle.txt) Running time for phasing: 38 minutes 3 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:02 AM CET on 12 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim91beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim91beagle.txt) Running time for phasing: 40 minutes 5 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:46 PM CET on 12 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim92beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim92beagle.txt) Running time for phasing: 53 minutes 3 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:55 PM CET on 12 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim93beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim93beagle.txt) Running time for phasing: 41 minutes 31 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:04 AM CET on 13 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim94beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim94beagle.txt) Running time for phasing: 2 hours 23 minutes 53 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:47 PM CET on 13 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim95beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim95beagle.txt) Running time for phasing: 48 minutes 52 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:55 PM CET on 13 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim96beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim96beagle.txt) Running time for phasing: 46 minutes 26 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:40 AM CET on 14 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim97beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim97beagle.txt) Running time for phasing: 1 hours 10 minutes 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:37 PM CET on 14 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim98beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim98beagle.txt) Running time for phasing: 40 minutes 55 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:41 PM CET on 14 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim99beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim99beagle.txt) Running time for phasing: 34 minutes 28 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:41 AM CET on 15 Jan 2012 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim100beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim100beagle.txt) Running time for phasing: 34 minutes 4 seconds Beagle version 3.3.2 (31 Oct 2011) finished