Results: Wilcoxon-Rank-Sum Wilcoxon-median t-test t-test-mean mean1 (std) mean2 (std) median1 median2 ######Matthews###### --->fabia-------beagle1--: 1.03e-17 0.623680 3.94e-33 0.598623 0.595935 ( 0.331423) -0.002688 ( 0.004088) 0.634389 -0.003767 --->fabia-------beagle2--: 5.35e-18 0.622833 4.21e-33 0.597724 0.595935 ( 0.331423) -0.001789 ( 0.003772) 0.634389 -0.003893 --->fabia-------plink----: 1.06e-16 0.609500 2.7e-32 0.583918 0.595935 ( 0.331423) 0.012018 ( 0.012331) 0.634389 0.010414 --->fabia-------germline1: 2.05e-17 0.620999 5.39e-33 0.597282 0.595935 ( 0.331423) -0.001346 ( 0.006138) 0.634389 -0.000188 --->fabia-------germline2: 4.08e-18 0.622242 4.52e-33 0.597598 0.595935 ( 0.331423) -0.001662 ( 0.003068) 0.634389 -0.002000 --->fabia-------dash-----: 1.17e-17 0.624369 3.71e-33 0.599637 0.595935 ( 0.331423) -0.003702 ( 0.006537) 0.634389 -0.001823 --->beagle1-----beagle2--: 3.45e-03 -0.001298 1.14e-02 -0.000899 -0.002688 ( 0.004088) -0.001789 ( 0.003772) -0.003767 -0.003893 --->beagle1-----plink----: 1.22e-15 -0.014429 4.68e-20 -0.014705 -0.002688 ( 0.004088) 0.012018 ( 0.012331) -0.003767 0.010414 --->beagle1-----germline1: 5.97e-04 -0.002025 5.36e-02 -0.001342 -0.002688 ( 0.004088) -0.001346 ( 0.006138) -0.003767 -0.000188 --->beagle1-----germline2: 1.83e-02 -0.000728 5.59e-02 -0.001025 -0.002688 ( 0.004088) -0.001662 ( 0.003068) -0.003767 -0.002000 --->beagle1-----dash-----: 3.49e-01 0.000558 1.23e-01 0.001014 -0.002688 ( 0.004088) -0.003702 ( 0.006537) -0.003767 -0.001823 --->beagle2-----plink----: 4.98e-15 -0.013417 1.3e-18 -0.013807 -0.001789 ( 0.003772) 0.012018 ( 0.012331) -0.003893 0.010414 --->beagle2-----germline1: 4.39e-03 -0.001309 5.11e-01 -0.000443 -0.001789 ( 0.003772) -0.001346 ( 0.006138) -0.003893 -0.000188 --->beagle2-----germline2: 6.56e-01 -8.46e-05 8.02e-01 -0.000127 -0.001789 ( 0.003772) -0.001662 ( 0.003068) -0.003893 -0.002000 --->beagle2-----dash-----: 7.3e-02 0.001144 5.63e-03 0.001913 -0.001789 ( 0.003772) -0.003702 ( 0.006537) -0.003893 -0.001823 --->plink-------germline1: 5.01e-14 0.012749 1.37e-15 0.013364 0.012018 ( 0.012331) -0.001346 ( 0.006138) 0.010414 -0.000188 --->plink-------germline2: 1.75e-15 0.013438 1.32e-19 0.013680 0.012018 ( 0.012331) -0.001662 ( 0.003068) 0.010414 -0.002000 --->plink-------dash-----: 1.48e-15 0.015266 6.38e-19 0.015719 0.012018 ( 0.012331) -0.003702 ( 0.006537) 0.010414 -0.001823 --->germline1---germline2: 4e-04 0.001453 7.16e-01 0.000316 -0.001346 ( 0.006138) -0.001662 ( 0.003068) -0.000188 -0.002000 --->germline1---dash-----: 8.71e-09 0.001665 5.46e-06 0.002355 -0.001346 ( 0.006138) -0.003702 ( 0.006537) -0.000188 -0.001823 --->germline2---dash-----: 1.57e-01 0.000798 1.87e-02 0.002039 -0.001662 ( 0.003068) -0.003702 ( 0.006537) -0.002000 -0.001823 ######F1###### --->fabia-------beagle1--: 1.41e-16 0.616612 6.07e-31 0.571175 0.571421 ( 0.337906) 0.000246 ( 0.000215) 0.579374 0.000198 --->fabia-------beagle2--: 3.64e-16 0.656499 6.02e-31 0.571195 0.571421 ( 0.337906) 0.000226 ( 0.000350) 0.579374 0.000000 --->fabia-------plink----: 1.33e-16 0.600709 6.93e-31 0.570123 0.571421 ( 0.337906) 0.001298 ( 0.000936) 0.579374 0.001183 --->fabia-------germline1: 1.37e-16 0.584372 6.2e-31 0.571044 0.571421 ( 0.337906) 0.000377 ( 4.69e-05) 0.579374 0.000381 --->fabia-------germline2: 1.19e-15 0.675783 5.87e-31 0.571359 0.571421 ( 0.337906) 6.16e-05 ( 0.000616) 0.579374 0.000000 --->fabia-------dash-----: 1.37e-16 0.584414 6.18e-31 0.571056 0.571421 ( 0.337906) 0.000365 ( 4.82e-05) 0.579374 0.000373 --->beagle1-----beagle2--: 2.24e-01 2.88e-05 1e+00 0.000000 0.000246 ( 0.000215) 0.000226 ( 0.000350) 0.000198 0.000000 --->beagle1-----plink----: 4.73e-15 -0.001048 3.96e-19 -0.001052 0.000246 ( 0.000215) 0.001298 ( 0.000936) 0.000198 0.001183 --->beagle1-----germline1: 7.2e-08 -0.000131 1.33e-08 -0.000131 0.000246 ( 0.000215) 0.000377 ( 4.69e-05) 0.000198 0.000381 --->beagle1-----germline2: 1.54e-13 0.000309 6.45e-03 0.000185 0.000246 ( 0.000215) 6.16e-05 ( 0.000616) 0.000198 0.000000 --->beagle1-----dash-----: 2.53e-07 -0.000119 8.47e-08 -0.000119 0.000246 ( 0.000215) 0.000365 ( 4.82e-05) 0.000198 0.000373 --->beagle2-----plink----: 8.97e-15 -0.001113 1.08e-18 -0.001072 0.000226 ( 0.000350) 0.001298 ( 0.000936) 0.000000 0.001183 --->beagle2-----germline1: 2.33e-06 -0.000210 2.78e-05 -0.000151 0.000226 ( 0.000350) 0.000377 ( 4.69e-05) 0.000000 0.000381 --->beagle2-----germline2: 1e+00 0.000000 2.63e-02 0.000164 0.000226 ( 0.000350) 6.16e-05 ( 0.000616) 0.000000 0.000000 --->beagle2-----dash-----: 4.85e-06 -0.000146 9.3e-05 -0.000139 0.000226 ( 0.000350) 0.000365 ( 4.82e-05) 0.000000 0.000373 --->plink-------germline1: 3.5e-13 0.000906 3.6e-16 0.000921 0.001298 ( 0.000936) 0.000377 ( 4.69e-05) 0.001183 0.000381 --->plink-------germline2: 5.82e-15 0.001412 5.41e-22 0.001237 0.001298 ( 0.000936) 6.16e-05 ( 0.000616) 0.001183 0.000000 --->plink-------dash-----: 2.57e-13 0.000917 1.81e-16 0.000933 0.001298 ( 0.000936) 0.000365 ( 4.82e-05) 0.001183 0.000373 --->germline1---germline2: 7.67e-17 4e-04 3.25e-06 0.000316 0.000377 ( 4.69e-05) 6.16e-05 ( 0.000616) 0.000381 0.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000377 ( 4.69e-05) 0.000365 ( 4.82e-05) 0.000381 0.000373 --->germline2---dash-----: 7.67e-17 -0.000345 5.44e-06 -0.000303 6.16e-05 ( 0.000616) 0.000365 ( 4.82e-05) 0.000000 0.000373 ######accuracy###### --->fabia-------beagle1--: 3.96e-18 0.223220 1.63e-116 0.222864 0.999864 ( 0.000130) 0.777000 ( 0.015596) 0.999902 0.776626 --->fabia-------beagle2--: 3.96e-18 0.086528 1.74e-90 0.086877 0.999864 ( 0.000130) 0.912987 ( 0.011195) 0.999902 0.915447 --->fabia-------plink----: 3.96e-18 0.115838 5.07e-125 0.115688 0.999864 ( 0.000130) 0.884176 ( 0.006612) 0.999902 0.884046 --->fabia-------germline1: 3.96e-18 0.960729 2.58e-174 0.956951 0.999864 ( 0.000130) 0.042913 ( 0.017374) 0.999902 0.038961 --->fabia-------germline2: 4.08e-18 0.020254 1.46e-89 0.020019 0.999864 ( 0.000130) 0.979846 ( 0.002623) 0.999902 0.979435 --->fabia-------dash-----: 3.96e-18 0.965835 4.01e-174 0.962017 0.999864 ( 0.000130) 0.037847 ( 0.017546) 0.999902 0.033804 --->beagle1-----beagle2--: 3.96e-18 -0.136293 2.16e-125 -0.135987 0.777000 ( 0.015596) 0.912987 ( 0.011195) 0.776626 0.915447 --->beagle1-----plink----: 3.96e-18 -0.107086 1.31e-86 -0.107176 0.777000 ( 0.015596) 0.884176 ( 0.006612) 0.776626 0.884046 --->beagle1-----germline1: 3.96e-18 0.735357 9.85e-155 0.734087 0.777000 ( 0.015596) 0.042913 ( 0.017374) 0.776626 0.038961 --->beagle1-----germline2: 3.96e-18 -0.202971 1.53e-111 -0.202845 0.777000 ( 0.015596) 0.979846 ( 0.002623) 0.776626 0.979435 --->beagle1-----dash-----: 3.96e-18 0.740584 9.29e-155 0.739153 0.777000 ( 0.015596) 0.037847 ( 0.017546) 0.776626 0.033804 --->beagle2-----plink----: 4.46e-18 0.029348 1.09e-45 0.028811 0.912987 ( 0.011195) 0.884176 ( 0.006612) 0.915447 0.884046 --->beagle2-----germline1: 3.96e-18 0.872381 5.02e-166 0.870074 0.912987 ( 0.011195) 0.042913 ( 0.017374) 0.915447 0.038961 --->beagle2-----germline2: 3.96e-18 -0.066483 4.71e-78 -0.066858 0.912987 ( 0.011195) 0.979846 ( 0.002623) 0.915447 0.979435 --->beagle2-----dash-----: 3.96e-18 0.877451 8.1e-166 0.875140 0.912987 ( 0.011195) 0.037847 ( 0.017546) 0.915447 0.033804 --->plink-------germline1: 3.96e-18 0.843761 1.71e-171 0.841263 0.884176 ( 0.006612) 0.042913 ( 0.017374) 0.884046 0.038961 --->plink-------germline2: 3.96e-18 -0.095765 4.54e-114 -0.095669 0.884176 ( 0.006612) 0.979846 ( 0.002623) 0.884046 0.979435 --->plink-------dash-----: 3.96e-18 0.848797 3.85e-171 0.846329 0.884176 ( 0.006612) 0.037847 ( 0.017546) 0.884046 0.033804 --->germline1---germline2: 3.96e-18 -0.940498 3.02e-175 -0.936932 0.042913 ( 0.017374) 0.979846 ( 0.002623) 0.038961 0.979435 --->germline1---dash-----: 3.96e-18 0.005031 1.25e-71 0.005066 0.042913 ( 0.017374) 0.037847 ( 0.017546) 0.038961 0.033804 --->germline2---dash-----: 3.96e-18 0.945657 5.69e-175 0.941998 0.979846 ( 0.002623) 0.037847 ( 0.017546) 0.979435 0.033804 ######FPR###### --->fabia-------beagle1--: 3.96e-18 -0.223136 1.79e-116 -0.222772 0.000106 ( 0.000118) 0.222877 ( 0.015601) 6.75e-05 0.223241 --->fabia-------beagle2--: 3.96e-18 -0.086389 2.12e-90 -0.086740 0.000106 ( 0.000118) 0.086846 ( 0.011198) 6.75e-05 0.084403 --->fabia-------plink----: 3.96e-18 -0.115756 5.29e-125 -0.115622 0.000106 ( 0.000118) 0.115728 ( 0.006615) 6.75e-05 0.115861 --->fabia-------germline1: 3.96e-18 -0.960940 2.64e-174 -0.957153 0.000106 ( 0.000118) 0.957259 ( 0.017389) 6.75e-05 0.961193 --->fabia-------germline2: 4.08e-18 -0.020098 2.76e-89 -0.019860 0.000106 ( 0.000118) 0.019966 ( 0.002623) 6.75e-05 0.020364 --->fabia-------dash-----: 3.96e-18 -0.966045 4.13e-174 -0.962216 0.000106 ( 0.000118) 0.962322 ( 0.017562) 6.75e-05 0.966363 --->beagle1-----beagle2--: 3.96e-18 0.136382 2.15e-125 0.136031 0.222877 ( 0.015601) 0.086846 ( 0.011198) 0.223241 0.084403 --->beagle1-----plink----: 3.96e-18 0.107060 1.41e-86 0.107149 0.222877 ( 0.015601) 0.115728 ( 0.006615) 0.223241 0.115861 --->beagle1-----germline1: 3.96e-18 -0.735676 1.02e-154 -0.734382 0.222877 ( 0.015601) 0.957259 ( 0.017389) 0.223241 0.961193 --->beagle1-----germline2: 3.96e-18 0.203033 1.53e-111 0.202911 0.222877 ( 0.015601) 0.019966 ( 0.002623) 0.223241 0.020364 --->beagle1-----dash-----: 3.96e-18 -0.740898 9.68e-155 -0.739444 0.222877 ( 0.015601) 0.962322 ( 0.017562) 0.223241 0.966363 --->beagle2-----plink----: 4.46e-18 -0.029440 8.92e-46 -0.028882 0.086846 ( 0.011198) 0.115728 ( 0.006615) 0.084403 0.115861 --->beagle2-----germline1: 3.96e-18 -0.872693 5.23e-166 -0.870413 0.086846 ( 0.011198) 0.957259 ( 0.017389) 0.084403 0.961193 --->beagle2-----germline2: 3.96e-18 0.066511 4.67e-78 0.066880 0.086846 ( 0.011198) 0.019966 ( 0.002623) 0.084403 0.020364 --->beagle2-----dash-----: 3.96e-18 -0.877814 8.54e-166 -0.875475 0.086846 ( 0.011198) 0.962322 ( 0.017562) 0.084403 0.966363 --->plink-------germline1: 3.96e-18 -0.844007 1.8e-171 -0.841531 0.115728 ( 0.006615) 0.957259 ( 0.017389) 0.115861 0.961193 --->plink-------germline2: 3.96e-18 0.095875 4.29e-114 0.095762 0.115728 ( 0.006615) 0.019966 ( 0.002623) 0.115861 0.020364 --->plink-------dash-----: 3.96e-18 -0.849076 4.09e-171 -0.846593 0.115728 ( 0.006615) 0.962322 ( 0.017562) 0.115861 0.966363 --->germline1---germline2: 3.96e-18 0.940876 3.28e-175 0.937293 0.957259 ( 0.017389) 0.019966 ( 0.002623) 0.961193 0.020364 --->germline1---dash-----: 3.96e-18 -0.005037 1.89e-71 -0.005062 0.957259 ( 0.017389) 0.962322 ( 0.017562) 0.961193 0.966363 --->germline2---dash-----: 3.96e-18 -0.946009 6.23e-175 -0.942356 0.019966 ( 0.002623) 0.962322 ( 0.017562) 0.020364 0.966363 ######FDR###### --->fabia-------beagle1--: 7.27e-17 -0.623614 1.28e-26 -0.582455 0.417422 ( 0.396422) 0.999877 ( 0.000108) 0.501879 0.999901 --->fabia-------beagle2--: 1.81e-16 -0.649486 1.28e-26 -0.582465 0.417422 ( 0.396422) 0.999887 ( 0.000176) 0.501879 1.000000 --->fabia-------plink----: 6.31e-17 -0.612862 1.36e-26 -0.581928 0.417422 ( 0.396422) 0.999350 ( 0.000469) 0.501879 0.999408 --->fabia-------germline1: 5.9e-17 -0.608553 1.29e-26 -0.582389 0.417422 ( 0.396422) 0.999811 ( 2.34e-05) 0.501879 0.999809 --->fabia-------germline2: 1.33e-15 -0.653155 2.97e-24 -0.572547 0.417422 ( 0.396422) 0.989969 ( 0.099997) 0.501879 1.000000 --->fabia-------dash-----: 5.9e-17 -0.608558 1.29e-26 -0.582396 0.417422 ( 0.396422) 0.999817 ( 2.41e-05) 0.501879 0.999813 --->beagle1-----beagle2--: 1e+00 0.000000 1e+00 0.000000 0.999877 ( 0.000108) 0.999887 ( 0.000176) 0.999901 1.000000 --->beagle1-----plink----: 4.73e-15 0.000522 3.91e-19 0.000527 0.999877 ( 0.000108) 0.999350 ( 0.000469) 0.999901 0.999408 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.999877 ( 0.000108) 0.999811 ( 2.34e-05) 0.999901 0.999809 --->beagle1-----germline2: 1e+00 0.000000 3.24e-01 0.009908 0.999877 ( 0.000108) 0.989969 ( 0.099997) 0.999901 1.000000 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.999877 ( 0.000108) 0.999817 ( 2.41e-05) 0.999901 0.999813 --->beagle2-----plink----: 8.97e-15 0.000553 1.09e-18 0.000537 0.999887 ( 0.000176) 0.999350 ( 0.000469) 1.000000 0.999408 --->beagle2-----germline1: 2.45e-06 0.000101 1e+00 0.000000 0.999887 ( 0.000176) 0.999811 ( 2.34e-05) 1.000000 0.999809 --->beagle2-----germline2: 1e+00 0.000000 3.24e-01 0.009918 0.999887 ( 0.000176) 0.989969 ( 0.099997) 1.000000 1.000000 --->beagle2-----dash-----: 5.01e-06 9.72e-05 1e+00 0.000000 0.999887 ( 0.000176) 0.999817 ( 2.41e-05) 1.000000 0.999813 --->plink-------germline1: 3.41e-13 -0.000456 3.49e-16 -0.000462 0.999350 ( 0.000469) 0.999811 ( 2.34e-05) 0.999408 0.999809 --->plink-------germline2: 6.62e-14 -0.000697 3.51e-01 0.009381 0.999350 ( 0.000469) 0.989969 ( 0.099997) 0.999408 1.000000 --->plink-------dash-----: 2.51e-13 -0.000462 1.76e-16 -0.000468 0.999350 ( 0.000469) 0.999817 ( 2.41e-05) 0.999408 0.999813 --->germline1---germline2: 1.29e-15 -0.000165 3.27e-01 0.009842 0.999811 ( 2.34e-05) 0.989969 ( 0.099997) 0.999809 1.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.999811 ( 2.34e-05) 0.999817 ( 2.41e-05) 0.999809 0.999813 --->germline2---dash-----: 1.29e-15 0.000160 3.27e-01 -0.009849 0.989969 ( 0.099997) 0.999817 ( 2.41e-05) 1.000000 0.999813 ######specifity###### --->fabia-------beagle1--: 3.96e-18 0.223116 1.79e-116 0.222772 0.999894 ( 0.000118) 0.777123 ( 0.015601) 0.999932 0.776759 --->fabia-------beagle2--: 3.96e-18 0.086394 2.12e-90 0.086740 0.999894 ( 0.000118) 0.913154 ( 0.011198) 0.999932 0.915597 --->fabia-------plink----: 3.96e-18 0.115774 5.28e-125 0.115622 0.999894 ( 0.000118) 0.884272 ( 0.006615) 0.999932 0.884139 --->fabia-------germline1: 3.96e-18 0.960932 2.64e-174 0.957153 0.999894 ( 0.000118) 0.042741 ( 0.017389) 0.999932 0.038807 --->fabia-------germline2: 4.08e-18 0.020089 2.76e-89 0.019860 0.999894 ( 0.000118) 0.980034 ( 0.002623) 0.999932 0.979636 --->fabia-------dash-----: 3.96e-18 0.966042 4.13e-174 0.962216 0.999894 ( 0.000118) 0.037678 ( 0.017562) 0.999932 0.033637 --->beagle1-----beagle2--: 3.96e-18 -0.136381 2.15e-125 -0.136031 0.777123 ( 0.015601) 0.913154 ( 0.011198) 0.776759 0.915597 --->beagle1-----plink----: 3.96e-18 -0.107059 1.41e-86 -0.107149 0.777123 ( 0.015601) 0.884272 ( 0.006615) 0.776759 0.884139 --->beagle1-----germline1: 3.96e-18 0.735680 1.02e-154 0.734382 0.777123 ( 0.015601) 0.042741 ( 0.017389) 0.776759 0.038807 --->beagle1-----germline2: 3.96e-18 -0.203038 1.53e-111 -0.202911 0.777123 ( 0.015601) 0.980034 ( 0.002623) 0.776759 0.979636 --->beagle1-----dash-----: 3.96e-18 0.740882 9.68e-155 0.739444 0.777123 ( 0.015601) 0.037678 ( 0.017562) 0.776759 0.033637 --->beagle2-----plink----: 4.46e-18 0.029433 8.92e-46 0.028882 0.913154 ( 0.011198) 0.884272 ( 0.006615) 0.915597 0.884139 --->beagle2-----germline1: 3.96e-18 0.872717 5.23e-166 0.870413 0.913154 ( 0.011198) 0.042741 ( 0.017389) 0.915597 0.038807 --->beagle2-----germline2: 3.96e-18 -0.066507 4.67e-78 -0.066880 0.913154 ( 0.011198) 0.980034 ( 0.002623) 0.915597 0.979636 --->beagle2-----dash-----: 3.96e-18 0.877791 8.54e-166 0.875475 0.913154 ( 0.011198) 0.037678 ( 0.017562) 0.915597 0.033637 --->plink-------germline1: 3.96e-18 0.844006 1.8e-171 0.841531 0.884272 ( 0.006615) 0.042741 ( 0.017389) 0.884139 0.038807 --->plink-------germline2: 3.96e-18 -0.095870 4.29e-114 -0.095762 0.884272 ( 0.006615) 0.980034 ( 0.002623) 0.884139 0.979636 --->plink-------dash-----: 3.96e-18 0.849075 4.09e-171 0.846593 0.884272 ( 0.006615) 0.037678 ( 0.017562) 0.884139 0.033637 --->germline1---germline2: 3.96e-18 -0.940866 3.28e-175 -0.937293 0.042741 ( 0.017389) 0.980034 ( 0.002623) 0.038807 0.979636 --->germline1---dash-----: 3.96e-18 0.005025 1.89e-71 0.005062 0.042741 ( 0.017389) 0.037678 ( 0.017562) 0.038807 0.033637 --->germline2---dash-----: 3.96e-18 0.946017 6.23e-175 0.942356 0.980034 ( 0.002623) 0.037678 ( 0.017562) 0.979636 0.033637 ######sensitivity###### --->fabia-------beagle1--: 4.33e-16 0.625764 1.09e-27 0.544631 0.686635 ( 0.331288) 0.142004 ( 0.123107) 0.806604 0.100000 --->fabia-------beagle2--: 3.64e-16 0.757416 4.1e-35 0.636552 0.686635 ( 0.331288) 0.050083 ( 0.075017) 0.806604 0.000000 --->fabia-------plink----: 3.73e-08 0.340990 2.84e-09 0.290959 0.686635 ( 0.331288) 0.395676 ( 0.287705) 0.806604 0.356423 --->fabia-------germline1: 1.57e-11 -0.196411 5.55e-11 -0.250636 0.686635 ( 0.331288) 0.937271 ( 0.098589) 0.806604 0.958108 --->fabia-------germline2: 1.19e-15 0.819704 1.06e-37 0.683653 0.686635 ( 0.331288) 0.002982 ( 0.029817) 0.806604 0.000000 --->fabia-------dash-----: 8.48e-10 -0.159867 2.11e-09 -0.224423 0.686635 ( 0.331288) 0.911058 ( 0.101524) 0.806604 0.942237 --->beagle1-----beagle2--: 6.81e-13 0.132496 1.29e-15 0.091921 0.142004 ( 0.123107) 0.050083 ( 0.075017) 0.100000 0.000000 --->beagle1-----plink----: 1.29e-10 -0.251662 8.37e-13 -0.253672 0.142004 ( 0.123107) 0.395676 ( 0.287705) 0.100000 0.356423 --->beagle1-----germline1: 3.91e-18 -0.806305 1.89e-75 -0.795267 0.142004 ( 0.123107) 0.937271 ( 0.098589) 0.100000 0.958108 --->beagle1-----germline2: 5.75e-14 0.165732 1.87e-18 0.139023 0.142004 ( 0.123107) 0.002982 ( 0.029817) 0.100000 0.000000 --->beagle1-----dash-----: 3.94e-18 -0.774875 2.43e-77 -0.769054 0.142004 ( 0.123107) 0.911058 ( 0.101524) 0.100000 0.942237 --->beagle2-----plink----: 8.7e-16 -0.360014 1.53e-20 -0.345593 0.050083 ( 0.075017) 0.395676 ( 0.287705) 0.000000 0.356423 --->beagle2-----germline1: 3.87e-18 -0.902432 1.02e-90 -0.887188 0.050083 ( 0.075017) 0.937271 ( 0.098589) 0.000000 0.958108 --->beagle2-----germline2: 1e+00 0.000000 1.22e-07 0.047102 0.050083 ( 0.075017) 0.002982 ( 0.029817) 0.000000 0.000000 --->beagle2-----dash-----: 3.93e-18 -0.872550 3.25e-90 -0.860975 0.050083 ( 0.075017) 0.911058 ( 0.101524) 0.000000 0.942237 --->plink-------germline1: 2.87e-17 -0.556102 1.08e-32 -0.541595 0.395676 ( 0.287705) 0.937271 ( 0.098589) 0.356423 0.958108 --->plink-------germline2: 3.77e-16 0.442121 6.42e-25 0.392695 0.395676 ( 0.287705) 0.002982 ( 0.029817) 0.356423 0.000000 --->plink-------dash-----: 3.23e-17 -0.530881 5.53e-31 -0.515382 0.395676 ( 0.287705) 0.911058 ( 0.101524) 0.356423 0.942237 --->germline1---germline2: 3.56e-18 0.950055 6.51e-91 0.934290 0.937271 ( 0.098589) 0.002982 ( 0.029817) 0.958108 0.000000 --->germline1---dash-----: 2.68e-04 0.050170 2.18e-04 0.026213 0.937271 ( 0.098589) 0.911058 ( 0.101524) 0.958108 0.942237 --->germline2---dash-----: 3.86e-18 -0.926603 1.31e-90 -0.908077 0.002982 ( 0.029817) 0.911058 ( 0.101524) 0.000000 0.942237 ######trueN###### --->fabia-------beagle1--: 3.96e-18 12229483 1.34e-189 12226225 2e+07 ( 2331) 7769726 ( 155982) 2e+07 7765961 --->fabia-------beagle2--: 3.96e-18 10862798 9.73e-199 10866174 2e+07 ( 2331) 9129777 ( 111954) 2e+07 9154274 --->fabia-------plink----: 3.96e-18 11156356 2.84e-222 11154940 2e+07 ( 2331) 8841011 ( 66152) 2e+07 8839743 --->fabia-------germline1: 3.96e-18 19606378 5.39e-205 19568626 2e+07 ( 2331) 427325 ( 173862) 2e+07 388006 --->fabia-------germline2: 3.96e-18 10199731 4.97e-258 10197503 2e+07 ( 2331) 9798449 ( 26236) 2e+07 9794350 --->fabia-------dash-----: 3.96e-18 19657698 1.09e-204 19619239 2e+07 ( 2331) 376712 ( 175592) 2e+07 336300 --->beagle1-----beagle2--: 3.96e-18 -1363347 2.15e-125 -1360051 7769726 ( 155982) 9129777 ( 111954) 7765961 9154274 --->beagle1-----plink----: 3.96e-18 -1070340 1.41e-86 -1071285 7769726 ( 155982) 8841011 ( 66152) 7765961 8839743 --->beagle1-----germline1: 3.96e-18 7354974 1e-154 7342401 7769726 ( 155982) 427325 ( 173862) 7765961 388006 --->beagle1-----germline2: 3.96e-18 -2030249 1.53e-111 -2028723 7769726 ( 155982) 9798449 ( 26236) 7765961 9794350 --->beagle1-----dash-----: 3.96e-18 7407401 9.54e-155 7393014 7769726 ( 155982) 376712 ( 175592) 7765961 336300 --->beagle2-----plink----: 4.46e-18 294182 8.91e-46 288766 9129777 ( 111954) 8841011 ( 66152) 9154274 8839743 --->beagle2-----germline1: 3.96e-18 8725543 5.12e-166 8702451 9129777 ( 111954) 427325 ( 173862) 9154274 388006 --->beagle2-----germline2: 3.96e-18 -665082 4.68e-78 -668672 9129777 ( 111954) 9798449 ( 26236) 9154274 9794350 --->beagle2-----dash-----: 3.96e-18 8776304 8.35e-166 8753064 9129777 ( 111954) 376712 ( 175592) 9154274 336300 --->plink-------germline1: 3.96e-18 8438392 1.76e-171 8413686 8841011 ( 66152) 427325 ( 173862) 8839743 388006 --->plink-------germline2: 3.96e-18 -958590 4.29e-114 -957437 8841011 ( 66152) 9798449 ( 26236) 8839743 9794350 --->plink-------dash-----: 3.96e-18 8488935 3.99e-171 8464299 8841011 ( 66152) 376712 ( 175592) 8839743 336300 --->germline1---germline2: 3.96e-18 -9406869 3.18e-175 -9371123 427325 ( 173862) 9798449 ( 26236) 388006 9794350 --->germline1---dash-----: 3.96e-18 50333 1.89e-71 50613 427325 ( 173862) 376712 ( 175592) 388006 336300 --->germline2---dash-----: 3.96e-18 9458113 6.04e-175 9421736 9798449 ( 26236) 376712 ( 175592) 9794350 336300 ######falseP###### --->fabia-------beagle1--: 3.96e-18 -2229478 1.82e-116 -2226228 2117 ( 2352) 2228344 ( 155978) 1350 2231944 --->fabia-------beagle2--: 3.96e-18 -862798 2.45e-90 -866177 2117 ( 2352) 868293 ( 111955) 1350 843876 --->fabia-------plink----: 3.96e-18 -1156361 7.76e-125 -1154942 2117 ( 2352) 1157059 ( 66132) 1350 1158397 --->fabia-------germline1: 3.96e-18 -9606399 3.07e-174 -9568628 2117 ( 2352) 9570745 ( 173802) 1350 9610166 --->fabia-------germline2: 4.08e-18 -2e+05 7.98e-89 -197505 2117 ( 2352) 2e+05 ( 26228) 1350 203600 --->fabia-------dash-----: 3.96e-18 -9657696 4.76e-174 -9619241 2117 ( 2352) 9621358 ( 175533) 1350 9661716 --->beagle1-----beagle2--: 3.96e-18 1363344 2.15e-125 1360051 2228344 ( 155978) 868293 ( 111955) 2231944 843876 --->beagle1-----plink----: 3.96e-18 1070331 1.41e-86 1071285 2228344 ( 155978) 1157059 ( 66132) 2231944 1158397 --->beagle1-----germline1: 3.96e-18 -7354969 1e-154 -7342401 2228344 ( 155978) 9570745 ( 173802) 2231944 9610166 --->beagle1-----germline2: 3.96e-18 2030249 1.53e-111 2028723 2228344 ( 155978) 2e+05 ( 26228) 2231944 203600 --->beagle1-----dash-----: 3.96e-18 -7407325 9.54e-155 -7393014 2228344 ( 155978) 9621358 ( 175533) 2231944 9661716 --->beagle2-----plink----: 4.46e-18 -294184 8.91e-46 -288766 868293 ( 111955) 1157059 ( 66132) 843876 1158397 --->beagle2-----germline1: 3.96e-18 -8725543 5.12e-166 -8702451 868293 ( 111955) 9570745 ( 173802) 843876 9610166 --->beagle2-----germline2: 3.96e-18 665083 4.68e-78 668672 868293 ( 111955) 2e+05 ( 26228) 843876 203600 --->beagle2-----dash-----: 3.96e-18 -8776342 8.35e-166 -8753064 868293 ( 111955) 9621358 ( 175533) 843876 9661716 --->plink-------germline1: 3.96e-18 -8438392 1.76e-171 -8413686 1157059 ( 66132) 9570745 ( 173802) 1158397 9610166 --->plink-------germline2: 3.96e-18 958601 4.29e-114 957437 1157059 ( 66132) 2e+05 ( 26228) 1158397 203600 --->plink-------dash-----: 3.96e-18 -8488941 3.99e-171 -8464299 1157059 ( 66132) 9621358 ( 175533) 1158397 9661716 --->germline1---germline2: 3.96e-18 9406869 3.18e-175 9371123 9570745 ( 173802) 2e+05 ( 26228) 9610166 203600 --->germline1---dash-----: 3.96e-18 -50333 1.89e-71 -50613 9570745 ( 173802) 9621358 ( 175533) 9610166 9661716 --->germline2---dash-----: 3.96e-18 -9458109 6.04e-175 -9421736 2e+05 ( 26228) 9621358 ( 175533) 203600 9661716 ######falseN###### --->fabia-------beagle1--: 4.33e-16 -1201 2.06e-27 -1052 602 ( 635) 1654 ( 266) 360 1664 --->fabia-------beagle2--: 3.64e-16 -1460 1.19e-34 -1230 602 ( 635) 1832 ( 200) 360 1830 --->fabia-------plink----: 2.59e-08 -657 1.64e-09 -575 602 ( 635) 1177 ( 584) 360 1252 --->fabia-------germline1: 1.64e-11 378 7.63e-11 480 602 ( 635) 123 ( 202) 360 82.5 --->fabia-------germline2: 1.19e-15 -1595 3.15e-37 -1321 602 ( 635) 1923 ( 154) 360 1930 --->fabia-------dash-----: 8.66e-10 309 2.32e-09 431 602 ( 635) 171 ( 199) 360 116 --->beagle1-----beagle2--: 7.81e-13 -251 2.07e-15 -178 1654 ( 266) 1832 ( 200) 1664 1830 --->beagle1-----plink----: 1.8e-10 478 8.92e-13 477 1654 ( 266) 1177 ( 584) 1664 1252 --->beagle1-----germline1: 3.96e-18 1549 7.07e-73 1532 1654 ( 266) 123 ( 202) 1664 82.5 --->beagle1-----germline2: 6.91e-14 -327 5.56e-18 -269 1654 ( 266) 1923 ( 154) 1664 1930 --->beagle1-----dash-----: 3.95e-18 1496 3.94e-74 1483 1654 ( 266) 171 ( 199) 1664 116 --->beagle2-----plink----: 1.15e-15 678 1.01e-20 655 1832 ( 200) 1177 ( 584) 1830 1252 --->beagle2-----germline1: 3.95e-18 1731 3.36e-85 1710 1832 ( 200) 123 ( 202) 1830 82.5 --->beagle2-----germline2: 1.37e-07 -197 3.09e-07 -91 1832 ( 200) 1923 ( 154) 1830 1930 --->beagle2-----dash-----: 3.96e-18 1676 5.8e-84 1661 1832 ( 200) 171 ( 199) 1830 116 --->plink-------germline1: 4.36e-17 1084 2.61e-31 1055 1177 ( 584) 123 ( 202) 1252 82.5 --->plink-------germline2: 3.8e-16 -843 2.19e-25 -746 1177 ( 584) 1923 ( 154) 1252 1930 --->plink-------dash-----: 3.81e-17 1029 8.08e-30 1006 1177 ( 584) 171 ( 199) 1252 116 --->germline1---germline2: 3.95e-18 -1832 4.05e-84 -1801 123 ( 202) 1923 ( 154) 82.5 1930 --->germline1---dash-----: 3.41e-04 -96.1 3.49e-04 -48.7 123 ( 202) 171 ( 199) 82.5 116 --->germline2---dash-----: 3.95e-18 1784 1.56e-83 1752 1923 ( 154) 171 ( 199) 1930 116 ######trueP###### --->fabia-------beagle1--: 4.33e-16 1203 1.99e-27 1054 1330 ( 652) 275 ( 241) 1605 210 --->fabia-------beagle2--: 3.64e-16 1462 1.2e-34 1232 1330 ( 652) 97.5 ( 148) 1605 0 --->fabia-------plink----: 2.49e-08 658 1.59e-09 577 1330 ( 652) 753 ( 542) 1605 690 --->fabia-------germline1: 1.68e-11 -375 9.44e-11 -477 1330 ( 652) 1807 ( 234) 1605 1831 --->fabia-------germline2: 1.19e-15 1600 3.08e-37 1323 1330 ( 652) 6.5 ( 65) 1605 0 --->fabia-------dash-----: 1.01e-09 -307 2.87e-09 -429 1330 ( 652) 1759 ( 241) 1605 1802 --->beagle1-----beagle2--: 7.81e-13 251 2.07e-15 178 275 ( 241) 97.5 ( 148) 210 0 --->beagle1-----plink----: 1.8e-10 -478 8.92e-13 -477 275 ( 241) 753 ( 542) 210 690 --->beagle1-----germline1: 3.96e-18 -1549 7.07e-73 -1532 275 ( 241) 1807 ( 234) 210 1831 --->beagle1-----germline2: 6.91e-14 327 5.56e-18 269 275 ( 241) 6.5 ( 65) 210 0 --->beagle1-----dash-----: 3.95e-18 -1496 3.94e-74 -1483 275 ( 241) 1759 ( 241) 210 1802 --->beagle2-----plink----: 1.15e-15 -678 1.01e-20 -655 97.5 ( 148) 753 ( 542) 0 690 --->beagle2-----germline1: 3.95e-18 -1732 3.36e-85 -1710 97.5 ( 148) 1807 ( 234) 0 1831 --->beagle2-----germline2: 1e+00 0.000000 3.09e-07 91.050000 97.550000 (148.291099) 6.500000 (65.000000) 0.000000 0.000000 --->beagle2-----dash-----: 3.96e-18 -1676 5.8e-84 -1661 97.5 ( 148) 1759 ( 241) 0 1802 --->plink-------germline1: 4.36e-17 -1084 2.61e-31 -1055 753 ( 542) 1807 ( 234) 690 1831 --->plink-------germline2: 3.8e-16 843 2.19e-25 746 753 ( 542) 6.5 ( 65) 690 0 --->plink-------dash-----: 3.81e-17 -1029 8.08e-30 -1006 753 ( 542) 1759 ( 241) 690 1802 --->germline1---germline2: 3.95e-18 1832 4.05e-84 1801 1807 ( 234) 6.5 ( 65) 1831 0 --->germline1---dash-----: 3.41e-04 96.3 3.49e-04 48.7 1807 ( 234) 1759 ( 241) 1831 1802 --->germline2---dash-----: 3.95e-18 -1784 1.56e-83 -1752 6.5 ( 65) 1759 ( 241) 0 1802 ######MatthewsSnps###### --->fabia-------beagle1--: 1e+00 0.000000 1e+00 0.000000 0.390168 ( 0.240471) 0.000000 ( 0.000000) 0.376113 0.000000 --->fabia-------beagle2--: 1.17e-17 0.379326 1.4e-29 0.389319 0.390168 ( 0.240471) 0.000849 ( 0.004962) 0.376113 0.000000 --->fabia-------plink----: 1.17e-17 0.379500 1.25e-29 0.390035 0.390168 ( 0.240471) 0.000134 ( 0.000438) 0.376113 0.000000 --->fabia-------germline1: 9.18e-18 0.369640 2.59e-28 0.385036 0.390168 ( 0.240471) 0.005132 ( 0.065241) 0.376113 0.012810 --->fabia-------germline2: 1.57e-17 0.395338 4.32e-30 0.404916 0.390168 ( 0.240471) -0.014747 ( 0.064369) 0.376113 -0.021496 --->fabia-------dash-----: 9.18e-18 0.369640 2.59e-28 0.385035 0.390168 ( 0.240471) 0.005133 ( 0.065241) 0.376113 0.012810 --->beagle1-----beagle2--: 1e+00 0.000000 1e+00 0.000000 0.000000 ( 0.000000) 0.000849 ( 0.004962) 0.000000 0.000000 --->beagle1-----plink----: 1e+00 0.000000 1e+00 0.000000 0.000000 ( 0.000000) 0.000134 ( 0.000438) 0.000000 0.000000 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.000000 ( 0.000000) 0.005132 ( 0.065241) 0.000000 0.012810 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 ( 0.000000) -0.014747 ( 0.064369) 0.000000 -0.021496 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 ( 0.000000) 0.005133 ( 0.065241) 0.000000 0.012810 --->beagle2-----plink----: 1e+00 0.000000 1.56e-01 0.000715 0.000849 ( 0.004962) 0.000134 ( 0.000438) 0.000000 0.000000 --->beagle2-----germline1: 1.78e-14 -0.012693 5.13e-01 -0.004284 0.000849 ( 0.004962) 0.005132 ( 0.065241) 0.000000 0.012810 --->beagle2-----germline2: 7.67e-17 0.021439 1.77e-02 0.015596 0.000849 ( 0.004962) -0.014747 ( 0.064369) 0.000000 -0.021496 --->beagle2-----dash-----: 1.78e-14 -0.012693 5.13e-01 -0.004284 0.000849 ( 0.004962) 0.005133 ( 0.065241) 0.000000 0.012810 --->plink-------germline1: 1.29e-15 -0.012700 4.45e-01 -0.004999 0.000134 ( 0.000438) 0.005132 ( 0.065241) 0.000000 0.012810 --->plink-------germline2: 7.67e-17 0.021487 2.29e-02 0.014881 0.000134 ( 0.000438) -0.014747 ( 0.064369) 0.000000 -0.021496 --->plink-------dash-----: 1.29e-15 -0.012700 4.45e-01 -0.005000 0.000134 ( 0.000438) 0.005133 ( 0.065241) 0.000000 0.012810 --->germline1---germline2: 1.29e-15 0.034253 1.17e-01 0.019880 0.005132 ( 0.065241) -0.014747 ( 0.064369) 0.012810 -0.021496 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.005132 ( 0.065241) 0.005133 ( 0.065241) 0.012810 0.012810 --->germline2---dash-----: 1.29e-15 -0.034275 1.17e-01 -0.019881 -0.014747 ( 0.064369) 0.005133 ( 0.065241) -0.021496 0.012810 ######F1Snps###### --->fabia-------beagle1--: 1.17e-17 0.284112 8.84e-23 0.308741 0.346602 ( 0.241022) 0.037861 ( 0.002918) 0.301261 0.037965 --->fabia-------beagle2--: 1.17e-17 0.284001 8.92e-23 0.308693 0.346602 ( 0.241022) 0.037908 ( 0.002915) 0.301261 0.038158 --->fabia-------plink----: 1.17e-17 0.284112 8.85e-23 0.308740 0.346602 ( 0.241022) 0.037861 ( 0.002918) 0.301261 0.037965 --->fabia-------germline1: 1.17e-17 0.284249 8.44e-23 0.308726 0.346602 ( 0.241022) 0.037876 ( 0.003787) 0.301261 0.038186 --->fabia-------germline2: 1.23e-16 0.340615 7.61e-25 0.340298 0.346602 ( 0.241022) 0.006304 ( 0.063039) 0.301261 0.000000 --->fabia-------dash-----: 1.17e-17 0.284249 8.44e-23 0.308726 0.346602 ( 0.241022) 0.037876 ( 0.003787) 0.301261 0.038186 --->beagle1-----beagle2--: 1e+00 0.000000 1e+00 0.000000 0.037861 ( 0.002918) 0.037908 ( 0.002915) 0.037965 0.038158 --->beagle1-----plink----: 1e+00 0.000000 1e+00 0.000000 0.037861 ( 0.002918) 0.037861 ( 0.002918) 0.037965 0.037965 --->beagle1-----germline1: 1.29e-15 -0.000313 1e+00 0.000000 0.037861 ( 0.002918) 0.037876 ( 0.003787) 0.037965 0.038186 --->beagle1-----germline2: 7.62e-17 0.037886 2.11e-06 0.031557 0.037861 ( 0.002918) 0.006304 ( 0.063039) 0.037965 0.000000 --->beagle1-----dash-----: 1.29e-15 -0.000314 1e+00 0.000000 0.037861 ( 0.002918) 0.037876 ( 0.003787) 0.037965 0.038186 --->beagle2-----plink----: 1e+00 0.000000 1e+00 0.000000 0.037908 ( 0.002915) 0.037861 ( 0.002918) 0.038158 0.037965 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.037908 ( 0.002915) 0.037876 ( 0.003787) 0.038158 0.038186 --->beagle2-----germline2: 7.62e-17 0.037933 2.04e-06 0.031605 0.037908 ( 0.002915) 0.006304 ( 0.063039) 0.038158 0.000000 --->beagle2-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.037908 ( 0.002915) 0.037876 ( 0.003787) 0.038158 0.038186 --->plink-------germline1: 1.29e-15 -0.000313 1e+00 0.000000 0.037861 ( 0.002918) 0.037876 ( 0.003787) 0.037965 0.038186 --->plink-------germline2: 7.63e-17 0.037886 2.11e-06 0.031558 0.037861 ( 0.002918) 0.006304 ( 0.063039) 0.037965 0.000000 --->plink-------dash-----: 1.29e-15 -0.000313 1e+00 0.000000 0.037861 ( 0.002918) 0.037876 ( 0.003787) 0.037965 0.038186 --->germline1---germline2: 7.67e-17 0.038225 3.48e-06 0.031572 0.037876 ( 0.003787) 0.006304 ( 0.063039) 0.038186 0.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.037876 ( 0.003787) 0.037876 ( 0.003787) 0.038186 0.038186 --->germline2---dash-----: 7.67e-17 -0.038228 3.48e-06 -0.031572 0.006304 ( 0.063039) 0.037876 ( 0.003787) 0.000000 0.038186 ######accuracySnps###### --->fabia-------beagle1--: 3.96e-18 0.906119 1.17e-123 0.902993 0.922291 ( 0.053427) 0.019298 ( 0.001514) 0.931950 0.019350 --->fabia-------beagle2--: 3.96e-18 0.904570 1.7e-123 0.901725 0.922291 ( 0.053427) 0.020566 ( 0.007736) 0.931950 0.019500 --->fabia-------plink----: 3.96e-18 0.906131 1.2e-123 0.902982 0.922291 ( 0.053427) 0.019309 ( 0.001509) 0.931950 0.019350 --->fabia-------germline1: 3.96e-18 0.894569 2.12e-119 0.891053 0.922291 ( 0.053427) 0.031238 ( 0.016774) 0.931950 0.027700 --->fabia-------germline2: 2.95e-08 -0.033006 1.51e-09 -0.036140 0.922291 ( 0.053427) 0.958431 ( 0.004055) 0.931950 0.957750 --->fabia-------dash-----: 3.96e-18 0.894564 2.13e-119 0.891052 0.922291 ( 0.053427) 0.031239 ( 0.016774) 0.931950 0.027700 --->beagle1-----beagle2--: 1e+00 0.000000 1.04e-01 -0.001268 0.019298 ( 0.001514) 0.020566 ( 0.007736) 0.019350 0.019500 --->beagle1-----plink----: 1e+00 0.000000 1e+00 0.000000 0.019298 ( 0.001514) 0.019309 ( 0.001509) 0.019350 0.019350 --->beagle1-----germline1: 8.11e-18 -0.008341 5.62e-10 -0.011940 0.019298 ( 0.001514) 0.031238 ( 0.016774) 0.019350 0.027700 --->beagle1-----germline2: 3.94e-18 -0.938688 1.91e-229 -0.939133 0.019298 ( 0.001514) 0.958431 ( 0.004055) 0.019350 0.957750 --->beagle1-----dash-----: 8.11e-18 -0.008343 5.6e-10 -0.011941 0.019298 ( 0.001514) 0.031239 ( 0.016774) 0.019350 0.027700 --->beagle2-----plink----: 1e+00 0.000000 1.07e-01 0.001257 0.020566 ( 0.007736) 0.019309 ( 0.001509) 0.019500 0.019350 --->beagle2-----germline1: 1.89e-15 -0.008236 1.45e-08 -0.010672 0.020566 ( 0.007736) 0.031238 ( 0.016774) 0.019500 0.027700 --->beagle2-----germline2: 3.95e-18 -0.938459 2.69e-202 -0.937865 0.020566 ( 0.007736) 0.958431 ( 0.004055) 0.019500 0.957750 --->beagle2-----dash-----: 1.89e-15 -0.008241 1.45e-08 -0.010673 0.020566 ( 0.007736) 0.031239 ( 0.016774) 0.019500 0.027700 --->plink-------germline1: 8.12e-18 -0.008347 5.68e-10 -0.011929 0.019309 ( 0.001509) 0.031238 ( 0.016774) 0.019350 0.027700 --->plink-------germline2: 3.94e-18 -0.938671 1.37e-229 -0.939122 0.019309 ( 0.001509) 0.958431 ( 0.004055) 0.019350 0.957750 --->plink-------dash-----: 8.12e-18 -0.008349 5.67e-10 -0.011930 0.019309 ( 0.001509) 0.031239 ( 0.016774) 0.019350 0.027700 --->germline1---germline2: 3.94e-18 -0.929944 5.3e-177 -0.927193 0.031238 ( 0.016774) 0.958431 ( 0.004055) 0.027700 0.957750 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.031238 ( 0.016774) 0.031239 ( 0.016774) 0.027700 0.027700 --->germline2---dash-----: 3.94e-18 0.929935 5.3e-177 0.927192 0.958431 ( 0.004055) 0.031239 ( 0.016774) 0.957750 0.027700 ######FPRSnps###### --->fabia-------beagle1--: 1e+00 0.000000 1e+00 0.000000 0.074228 ( 0.054325) 1.000000 ( 0.000000) 0.062980 1.000000 --->fabia-------beagle2--: 3.94e-18 -0.928017 7.96e-124 -0.924480 0.074228 ( 0.054325) 0.998708 ( 0.007867) 0.062980 1.000000 --->fabia-------plink----: 3.95e-18 -0.929874 5.08e-124 -0.925761 0.074228 ( 0.054325) 0.999989 ( 4.07e-05) 0.062980 1.000000 --->fabia-------germline1: 3.96e-18 -0.917219 1.01e-119 -0.913393 0.074228 ( 0.054325) 0.987621 ( 0.018047) 0.062980 0.991542 --->fabia-------germline2: 7.05e-14 0.046867 3.42e-15 0.051377 0.074228 ( 0.054325) 0.022851 ( 0.003084) 0.062980 0.023157 --->fabia-------dash-----: 3.96e-18 -0.917219 1.01e-119 -0.913392 0.074228 ( 0.054325) 0.987620 ( 0.018047) 0.062980 0.991542 --->beagle1-----beagle2--: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.998708 ( 0.007867) 1.000000 1.000000 --->beagle1-----plink----: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.999989 ( 4.07e-05) 1.000000 1.000000 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.987621 ( 0.018047) 1.000000 0.991542 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.022851 ( 0.003084) 1.000000 0.023157 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.987620 ( 0.018047) 1.000000 0.991542 --->beagle2-----plink----: 1e+00 0.000000 1.07e-01 -0.001281 0.998708 ( 0.007867) 0.999989 ( 4.07e-05) 1.000000 1.000000 --->beagle2-----germline1: 9.73e-16 0.008433 1.53e-08 0.011087 0.998708 ( 0.007867) 0.987621 ( 0.018047) 1.000000 0.991542 --->beagle2-----germline2: 3.96e-18 0.976720 5.7e-206 0.975857 0.998708 ( 0.007867) 0.022851 ( 0.003084) 1.000000 0.023157 --->beagle2-----dash-----: 9.73e-16 0.008436 1.53e-08 0.011088 0.998708 ( 0.007867) 0.987620 ( 0.018047) 1.000000 0.991542 --->plink-------germline1: 3.96e-18 0.008496 6.12e-10 0.012368 0.999989 ( 4.07e-05) 0.987621 ( 0.018047) 1.000000 0.991542 --->plink-------germline2: 3.96e-18 0.976804 6.58e-250 0.977138 0.999989 ( 4.07e-05) 0.022851 ( 0.003084) 1.000000 0.023157 --->plink-------dash-----: 3.96e-18 0.008496 6.1e-10 0.012369 0.999989 ( 4.07e-05) 0.987620 ( 0.018047) 1.000000 0.991542 --->germline1---germline2: 3.95e-18 0.968350 4.92e-175 0.964770 0.987621 ( 0.018047) 0.022851 ( 0.003084) 0.991542 0.023157 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.987621 ( 0.018047) 0.987620 ( 0.018047) 0.991542 0.991542 --->germline2---dash-----: 3.95e-18 -0.968405 4.92e-175 -0.964769 0.022851 ( 0.003084) 0.987620 ( 0.018047) 0.023157 0.991542 ######FDRSnps###### --->fabia-------beagle1--: 1.17e-17 -0.192549 1.16e-15 -0.244264 0.736438 ( 0.256475) 0.980702 ( 0.001514) 0.818631 0.980650 --->fabia-------beagle2--: 1.17e-17 -0.192488 1.17e-15 -0.244239 0.736438 ( 0.256475) 0.980677 ( 0.001512) 0.818631 0.980550 --->fabia-------plink----: 1.17e-17 -0.192555 1.16e-15 -0.244264 0.736438 ( 0.256475) 0.980702 ( 0.001514) 0.818631 0.980650 --->fabia-------germline1: 1.17e-17 -0.192596 1.15e-15 -0.244252 0.736438 ( 0.256475) 0.980691 ( 0.001947) 0.818631 0.980536 --->fabia-------germline2: 6.78e-16 -0.226545 3.13e-16 -0.257329 0.736438 ( 0.256475) 0.993767 ( 0.062332) 0.818631 1.000000 --->fabia-------dash-----: 1.17e-17 -0.192596 1.15e-15 -0.244252 0.736438 ( 0.256475) 0.980691 ( 0.001947) 0.818631 0.980536 --->beagle1-----beagle2--: 1e+00 0.000000 1e+00 0.000000 0.980702 ( 0.001514) 0.980677 ( 0.001512) 0.980650 0.980550 --->beagle1-----plink----: 1e+00 0.000000 1e+00 0.000000 0.980702 ( 0.001514) 0.980702 ( 0.001514) 0.980650 0.980650 --->beagle1-----germline1: 1.29e-15 0.000170 1e+00 0.000000 0.980702 ( 0.001514) 0.980691 ( 0.001947) 0.980650 0.980536 --->beagle1-----germline2: 7.62e-17 -0.019313 3.79e-02 -0.013065 0.980702 ( 0.001514) 0.993767 ( 0.062332) 0.980650 1.000000 --->beagle1-----dash-----: 1.29e-15 0.000170 1e+00 0.000000 0.980702 ( 0.001514) 0.980691 ( 0.001947) 0.980650 0.980536 --->beagle2-----plink----: 1e+00 0.000000 1e+00 0.000000 0.980677 ( 0.001512) 0.980702 ( 0.001514) 0.980550 0.980650 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.980677 ( 0.001512) 0.980691 ( 0.001947) 0.980550 0.980536 --->beagle2-----germline2: 7.62e-17 -0.019343 3.76e-02 -0.013089 0.980677 ( 0.001512) 0.993767 ( 0.062332) 0.980550 1.000000 --->beagle2-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.980677 ( 0.001512) 0.980691 ( 0.001947) 0.980550 0.980536 --->plink-------germline1: 1.29e-15 0.000170 1e+00 0.000000 0.980702 ( 0.001514) 0.980691 ( 0.001947) 0.980650 0.980536 --->plink-------germline2: 7.63e-17 -0.019313 3.79e-02 -0.013065 0.980702 ( 0.001514) 0.993767 ( 0.062332) 0.980650 1.000000 --->plink-------dash-----: 1.29e-15 0.000170 1e+00 0.000000 0.980702 ( 0.001514) 0.980691 ( 0.001947) 0.980650 0.980536 --->germline1---germline2: 7.67e-17 -0.019496 4.02e-02 -0.013076 0.980691 ( 0.001947) 0.993767 ( 0.062332) 0.980536 1.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.980691 ( 0.001947) 0.980691 ( 0.001947) 0.980536 0.980536 --->germline2---dash-----: 7.67e-17 0.019491 4.02e-02 0.013076 0.993767 ( 0.062332) 0.980691 ( 0.001947) 1.000000 0.980536 ######specifitySnps###### --->fabia-------beagle1--: 1e+00 0.000000 1e+00 0.000000 0.925772 ( 0.054325) 0.000000 ( 0.000000) 0.937020 0.000000 --->fabia-------beagle2--: 3.94e-18 0.928017 7.96e-124 0.924480 0.925772 ( 0.054325) 0.001292 ( 0.007867) 0.937020 0.000000 --->fabia-------plink----: 3.95e-18 0.929874 5.08e-124 0.925761 0.925772 ( 0.054325) 1.12e-05 ( 4.07e-05) 0.937020 0.000000 --->fabia-------germline1: 3.96e-18 0.917210 1.01e-119 0.913393 0.925772 ( 0.054325) 0.012379 ( 0.018047) 0.937020 0.008458 --->fabia-------germline2: 7.05e-14 -0.046875 3.42e-15 -0.051377 0.925772 ( 0.054325) 0.977149 ( 0.003084) 0.937020 0.976843 --->fabia-------dash-----: 3.96e-18 0.917210 1.01e-119 0.913392 0.925772 ( 0.054325) 0.012380 ( 0.018047) 0.937020 0.008458 --->beagle1-----beagle2--: 1e+00 0.000000 1e+00 0.000000 0.000000 ( 0.000000) 0.001292 ( 0.007867) 0.000000 0.000000 --->beagle1-----plink----: 1e+00 0.000000 1e+00 0.000000 0.000000 ( 0.000000) 1.12e-05 ( 4.07e-05) 0.000000 0.000000 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.000000 ( 0.000000) 0.012379 ( 0.018047) 0.000000 0.008458 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 ( 0.000000) 0.977149 ( 0.003084) 0.000000 0.976843 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 ( 0.000000) 0.012380 ( 0.018047) 0.000000 0.008458 --->beagle2-----plink----: 1e+00 0.000000 1.07e-01 0.001281 0.001292 ( 0.007867) 1.12e-05 ( 4.07e-05) 0.000000 0.000000 --->beagle2-----germline1: 9.73e-16 -0.008438 1.53e-08 -0.011087 0.001292 ( 0.007867) 0.012379 ( 0.018047) 0.000000 0.008458 --->beagle2-----germline2: 3.96e-18 -0.976706 5.7e-206 -0.975857 0.001292 ( 0.007867) 0.977149 ( 0.003084) 0.000000 0.976843 --->beagle2-----dash-----: 9.73e-16 -0.008440 1.53e-08 -0.011088 0.001292 ( 0.007867) 0.012380 ( 0.018047) 0.000000 0.008458 --->plink-------germline1: 3.96e-18 -0.008484 6.12e-10 -0.012368 1.12e-05 ( 4.07e-05) 0.012379 ( 0.018047) 0.000000 0.008458 --->plink-------germline2: 3.96e-18 -0.976798 6.58e-250 -0.977138 1.12e-05 ( 4.07e-05) 0.977149 ( 0.003084) 0.000000 0.976843 --->plink-------dash-----: 3.96e-18 -0.008483 6.1e-10 -0.012369 1.12e-05 ( 4.07e-05) 0.012380 ( 0.018047) 0.000000 0.008458 --->germline1---germline2: 3.96e-18 -0.968405 4.92e-175 -0.964770 0.012379 ( 0.018047) 0.977149 ( 0.003084) 0.008458 0.976843 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.012379 ( 0.018047) 0.012380 ( 0.018047) 0.008458 0.008458 --->germline2---dash-----: 3.96e-18 0.968350 4.92e-175 0.964769 0.977149 ( 0.003084) 0.012380 ( 0.018047) 0.976843 0.008458 ######sensitivitySnps###### --->fabia-------beagle1--: 1e+00 0.000000 1e+00 0.000000 0.742861 ( 0.288568) 1.000000 ( 0.000000) 0.835759 1.000000 --->fabia-------beagle2--: 1e+00 0.000000 1e+00 0.000000 0.742861 ( 0.288568) 1.000000 ( 0.000000) 0.835759 1.000000 --->fabia-------plink----: 1e+00 0.000000 1e+00 0.000000 0.742861 ( 0.288568) 1.000000 ( 0.000000) 0.835759 1.000000 --->fabia-------germline1: 3.41e-15 -0.237993 6.72e-14 -0.246814 0.742861 ( 0.288568) 0.989676 ( 0.075854) 0.835759 1.000000 --->fabia-------germline2: 8.08e-17 0.821001 7e-45 0.736485 0.742861 ( 0.288568) 0.006376 ( 0.063761) 0.835759 0.000000 --->fabia-------dash-----: 3.41e-15 -0.237993 6.72e-14 -0.246814 0.742861 ( 0.288568) 0.989676 ( 0.075854) 0.835759 1.000000 --->beagle1-----beagle2--: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 1.000000 ( 0.000000) 1.000000 1.000000 --->beagle1-----plink----: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 1.000000 ( 0.000000) 1.000000 1.000000 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.989676 ( 0.075854) 1.000000 1.000000 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.006376 ( 0.063761) 1.000000 0.000000 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.989676 ( 0.075854) 1.000000 1.000000 --->beagle2-----plink----: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 1.000000 ( 0.000000) 1.000000 1.000000 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.989676 ( 0.075854) 1.000000 1.000000 --->beagle2-----germline2: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.006376 ( 0.063761) 1.000000 0.000000 --->beagle2-----dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.989676 ( 0.075854) 1.000000 1.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.989676 ( 0.075854) 1.000000 1.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.006376 ( 0.063761) 1.000000 0.000000 --->plink-------dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 ( 0.000000) 0.989676 ( 0.075854) 1.000000 1.000000