Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:41 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim76beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim76beagle.txt) Running time for phasing: 23 minutes 50 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:15 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim77beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim77beagle.txt) Running time for phasing: 30 minutes 23 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:53 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim78beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim78beagle.txt) Running time for phasing: 22 minutes 21 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:24 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim79beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim79beagle.txt) Running time for phasing: 15 minutes 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:49 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim80beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim80beagle.txt) Running time for phasing: 15 minutes 50 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:29 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim81beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim81beagle.txt) Running time for phasing: 46 minutes 0 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:29 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim82beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim82beagle.txt) Running time for phasing: 14 minutes 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:52 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim83beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim83beagle.txt) Running time for phasing: 14 minutes 48 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:15 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim84beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim84beagle.txt) Running time for phasing: 17 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:41 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim85beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim85beagle.txt) Running time for phasing: 15 minutes 11 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:05 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim86beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim86beagle.txt) Running time for phasing: 14 minutes 3 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:28 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim87beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim87beagle.txt) Running time for phasing: 15 minutes 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:52 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim88beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim88beagle.txt) Running time for phasing: 15 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:16 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim89beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim89beagle.txt) Running time for phasing: 15 minutes 27 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:39 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim90beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim90beagle.txt) Running time for phasing: 17 minutes 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:08 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim91beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim91beagle.txt) Running time for phasing: 14 minutes 23 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:32 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim92beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim92beagle.txt) Running time for phasing: 13 minutes 52 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:55 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim93beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim93beagle.txt) Running time for phasing: 14 minutes 55 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:17 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim94beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim94beagle.txt) Running time for phasing: 14 minutes 2 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:40 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim95beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim95beagle.txt) Running time for phasing: 14 minutes 34 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:04 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim96beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim96beagle.txt) Running time for phasing: 14 minutes 5 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:27 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim97beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim97beagle.txt) Running time for phasing: 15 minutes 16 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:51 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim98beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim98beagle.txt) Running time for phasing: 15 minutes 12 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:14 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim99beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim99beagle.txt) Running time for phasing: 14 minutes 21 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:37 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim100beagle.txt fastibd=true missing=N out=beagleresd.txt number of markers = 10000 number of haplotypes = 2000 (dataSim100beagle.txt) Running time for phasing: 13 minutes 22 seconds Beagle version 3.3.2 (31 Oct 2011) finished