Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:39 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim51beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim51beagle.txt) Running time for phasing: 23 minutes 32 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:10 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim52beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim52beagle.txt) Running time for phasing: 30 minutes 55 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:50 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim53beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim53beagle.txt) Running time for phasing: 17 minutes 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:21 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim54beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim54beagle.txt) Running time for phasing: 14 minutes 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:44 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim55beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim55beagle.txt) Running time for phasing: 15 minutes 56 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:11 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim56beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim56beagle.txt) Running time for phasing: 1 hours 2 minutes 20 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:21 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim57beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim57beagle.txt) Running time for phasing: 15 minutes 2 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:44 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim58beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim58beagle.txt) Running time for phasing: 14 minutes 16 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:08 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim59beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim59beagle.txt) Running time for phasing: 16 minutes 58 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:33 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim60beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim60beagle.txt) Running time for phasing: 14 minutes 0 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:56 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim61beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim61beagle.txt) Running time for phasing: 14 minutes 12 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:20 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim62beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim62beagle.txt) Running time for phasing: 15 minutes 26 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:44 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim63beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim63beagle.txt) Running time for phasing: 14 minutes 58 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:09 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim64beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim64beagle.txt) Running time for phasing: 14 minutes 2 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:31 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim65beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim65beagle.txt) Running time for phasing: 15 minutes 6 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:53 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim66beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim66beagle.txt) Running time for phasing: 20 minutes 12 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:22 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim67beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim67beagle.txt) Running time for phasing: 15 minutes 14 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:46 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim68beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim68beagle.txt) Running time for phasing: 14 minutes 26 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:09 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim69beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim69beagle.txt) Running time for phasing: 14 minutes 18 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:33 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim70beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim70beagle.txt) Running time for phasing: 13 minutes 51 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:55 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim71beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim71beagle.txt) Running time for phasing: 14 minutes 23 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:18 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim72beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim72beagle.txt) Running time for phasing: 14 minutes 23 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:43 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim73beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim73beagle.txt) Running time for phasing: 14 minutes 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:05 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim74beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim74beagle.txt) Running time for phasing: 15 minutes 11 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:29 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim75beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim75beagle.txt) Running time for phasing: 14 minutes 6 seconds Beagle version 3.3.2 (31 Oct 2011) finished