Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:01 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim26beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim26beagle.txt) Running time for phasing: 22 minutes 56 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:34 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim27beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim27beagle.txt) Running time for phasing: 15 minutes 3 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:01 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim28beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim28beagle.txt) Running time for phasing: 22 minutes 21 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:33 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim29beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim29beagle.txt) Running time for phasing: 14 minutes 24 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:57 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim30beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim30beagle.txt) Running time for phasing: 15 minutes 12 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:19 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim31beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim31beagle.txt) Running time for phasing: 14 minutes 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:42 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim32beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim32beagle.txt) Running time for phasing: 14 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:05 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim33beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim33beagle.txt) Running time for phasing: 16 minutes 30 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:30 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim34beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim34beagle.txt) Running time for phasing: 17 minutes 20 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:54 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim35beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim35beagle.txt) Running time for phasing: 17 minutes 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:22 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim36beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim36beagle.txt) Running time for phasing: 14 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:46 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim37beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim37beagle.txt) Running time for phasing: 17 minutes 17 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:10 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim38beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim38beagle.txt) Running time for phasing: 14 minutes 34 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:33 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim39beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim39beagle.txt) Running time for phasing: 16 minutes 55 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:57 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim40beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim40beagle.txt) Running time for phasing: 24 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:31 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim41beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim41beagle.txt) Running time for phasing: 14 minutes 36 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:53 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim42beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim42beagle.txt) Running time for phasing: 14 minutes 50 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:14 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim43beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim43beagle.txt) Running time for phasing: 14 minutes 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:36 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim44beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim44beagle.txt) Running time for phasing: 14 minutes 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:00 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim45beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim45beagle.txt) Running time for phasing: 15 minutes 35 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:26 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim46beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim46beagle.txt) Running time for phasing: 14 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:48 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim47beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim47beagle.txt) Running time for phasing: 13 minutes 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:12 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim48beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim48beagle.txt) Running time for phasing: 18 minutes 4 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:38 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim49beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim49beagle.txt) Running time for phasing: 14 minutes 20 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:02 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim50beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim50beagle.txt) Running time for phasing: 14 minutes 26 seconds Beagle version 3.3.2 (31 Oct 2011) finished