Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:35 PM CET on 10 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim1beagle.txt) Running time for phasing: 40 minutes 20 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:27 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim2beagle.txt) Running time for phasing: 14 minutes 29 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:52 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim3beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim3beagle.txt) Running time for phasing: 26 minutes 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:29 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim4beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim4beagle.txt) Running time for phasing: 16 minutes 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:54 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim5beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim5beagle.txt) Running time for phasing: 13 minutes 48 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:16 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim6beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim6beagle.txt) Running time for phasing: 14 minutes 29 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:40 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim7beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim7beagle.txt) Running time for phasing: 14 minutes 4 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:03 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim8beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim8beagle.txt) Running time for phasing: 15 minutes 23 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:27 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim9beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim9beagle.txt) Running time for phasing: 15 minutes 58 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:52 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim10beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim10beagle.txt) Running time for phasing: 17 minutes 26 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:17 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim11beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim11beagle.txt) Running time for phasing: 14 minutes 6 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:40 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim12beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim12beagle.txt) Running time for phasing: 17 minutes 47 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:07 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim13beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim13beagle.txt) Running time for phasing: 15 minutes 48 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:31 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim14beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim14beagle.txt) Running time for phasing: 18 minutes 16 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:57 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim15beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim15beagle.txt) Running time for phasing: 23 minutes 37 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:31 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim16beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim16beagle.txt) Running time for phasing: 15 minutes 13 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:53 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim17beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim17beagle.txt) Running time for phasing: 15 minutes 23 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:18 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim18beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim18beagle.txt) Running time for phasing: 15 minutes 2 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:41 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim19beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim19beagle.txt) Running time for phasing: 15 minutes 7 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:05 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim20beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim20beagle.txt) Running time for phasing: 14 minutes 28 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:28 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim21beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim21beagle.txt) Running time for phasing: 14 minutes 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:51 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim22beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim22beagle.txt) Running time for phasing: 15 minutes 5 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:14 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim23beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim23beagle.txt) Running time for phasing: 18 minutes 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:42 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim24beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim24beagle.txt) Running time for phasing: 14 minutes 10 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:05 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim25beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim25beagle.txt) Running time for phasing: 14 minutes 20 seconds Beagle version 3.3.2 (31 Oct 2011) finished