@----------------------------------------------------------@
|        PLINK!       |     v1.07      |   10/Aug/2009     |
|----------------------------------------------------------|
|  (C) 2009 Shaun Purcell, GNU General Public License, v2  |
|----------------------------------------------------------|
|  For documentation, citation & bug-report instructions:  |
|        http://pngu.mgh.harvard.edu/purcell/plink/        |
@----------------------------------------------------------@

Web-based version check ( --noweb to skip )
Recent cached web-check found... OK, v1.07 is current

Writing this text to log file [ dataSim53plinkpruned.log ]
Analysis started: Mon Feb 11 19:56:32 2013

Options in effect:
	--file dataSim53plink
	--extract dataSim53plink.prune.in
	--make-bed
	--out dataSim53plinkpruned

10000 (of 10000) markers to be included from [ dataSim53plink.map ]
Warning, found 1000 individuals with ambiguous sex codes
Writing list of these individuals to [ dataSim53plinkpruned.nosex ]
1000 individuals read from [ dataSim53plink.ped ] 
0 individuals with nonmissing phenotypes
Assuming a disease phenotype (1=unaff, 2=aff, 0=miss)
Missing phenotype value is also -9
0 cases, 0 controls and 1000 missing
0 males, 0 females, and 1000 of unspecified sex
Reading list of SNPs to extract [ dataSim53plink.prune.in ] ... 6588 read
Before frequency and genotyping pruning, there are 6588 SNPs
1000 founders and 0 non-founders found
Total genotyping rate in remaining individuals is 1
0 SNPs failed missingness test ( GENO > 1 )
0 SNPs failed frequency test ( MAF < 0 )
After frequency and genotyping pruning, there are 6588 SNPs
After filtering, 0 cases, 0 controls and 1000 missing
After filtering, 0 males, 0 females, and 1000 of unspecified sex
Writing pedigree information to [ dataSim53plinkpruned.fam ] 
Writing map (extended format) information to [ dataSim53plinkpruned.bim ] 
Writing genotype bitfile to [ dataSim53plinkpruned.bed ] 
Using (default) SNP-major mode

Analysis finished: Mon Feb 11 19:56:41 2013