Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:38 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim51beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim51beagle.txt) Running time for phasing: 23 minutes 24 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:09 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim52beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim52beagle.txt) Running time for phasing: 28 minutes 24 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:48 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim53beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim53beagle.txt) Running time for phasing: 16 minutes 29 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:15 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim54beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim54beagle.txt) Running time for phasing: 15 minutes 22 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:39 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim55beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim55beagle.txt) Running time for phasing: 15 minutes 14 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:04 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim56beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim56beagle.txt) Running time for phasing: 29 minutes 0 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:47 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim57beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim57beagle.txt) Running time for phasing: 36 minutes 54 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:34 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim58beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim58beagle.txt) Running time for phasing: 14 minutes 49 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:57 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim59beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim59beagle.txt) Running time for phasing: 14 minutes 6 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:21 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim60beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim60beagle.txt) Running time for phasing: 17 minutes 52 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:46 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim61beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim61beagle.txt) Running time for phasing: 15 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:09 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim62beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim62beagle.txt) Running time for phasing: 15 minutes 8 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:31 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim63beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim63beagle.txt) Running time for phasing: 15 minutes 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:55 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim64beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim64beagle.txt) Running time for phasing: 14 minutes 33 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:17 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim65beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim65beagle.txt) Running time for phasing: 14 minutes 54 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:41 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim66beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim66beagle.txt) Running time for phasing: 16 minutes 23 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:09 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim67beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim67beagle.txt) Running time for phasing: 15 minutes 13 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:32 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim68beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim68beagle.txt) Running time for phasing: 15 minutes 7 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:55 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim69beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim69beagle.txt) Running time for phasing: 13 minutes 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:18 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim70beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim70beagle.txt) Running time for phasing: 14 minutes 12 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:41 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim71beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim71beagle.txt) Running time for phasing: 14 minutes 19 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:04 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim72beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim72beagle.txt) Running time for phasing: 15 minutes 2 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:28 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim73beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim73beagle.txt) Running time for phasing: 15 minutes 39 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:51 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim74beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim74beagle.txt) Running time for phasing: 15 minutes 18 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:15 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim75beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim75beagle.txt) Running time for phasing: 14 minutes 52 seconds Beagle version 3.3.2 (31 Oct 2011) finished