Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:31 PM CET on 10 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim1beagle.txt) Running time for phasing: 36 minutes 24 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:20 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim2beagle.txt) Running time for phasing: 14 minutes 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:44 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim3beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim3beagle.txt) Running time for phasing: 17 minutes 4 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:10 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim4beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim4beagle.txt) Running time for phasing: 24 minutes 36 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:44 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim5beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim5beagle.txt) Running time for phasing: 15 minutes 4 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:07 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim6beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim6beagle.txt) Running time for phasing: 14 minutes 15 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:30 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim7beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim7beagle.txt) Running time for phasing: 13 minutes 54 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:53 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim8beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim8beagle.txt) Running time for phasing: 14 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:16 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim9beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim9beagle.txt) Running time for phasing: 14 minutes 30 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:43 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim10beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim10beagle.txt) Running time for phasing: 14 minutes 31 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:06 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim11beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim11beagle.txt) Running time for phasing: 17 minutes 9 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:30 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim12beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim12beagle.txt) Running time for phasing: 13 minutes 57 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:52 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim13beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim13beagle.txt) Running time for phasing: 18 minutes 23 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:17 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim14beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim14beagle.txt) Running time for phasing: 15 minutes 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:41 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim15beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim15beagle.txt) Running time for phasing: 30 minutes 57 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:21 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim16beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim16beagle.txt) Running time for phasing: 14 minutes 32 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:43 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim17beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim17beagle.txt) Running time for phasing: 14 minutes 16 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:05 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim18beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim18beagle.txt) Running time for phasing: 13 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:28 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim19beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim19beagle.txt) Running time for phasing: 13 minutes 35 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:51 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim20beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim20beagle.txt) Running time for phasing: 14 minutes 8 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:14 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim21beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim21beagle.txt) Running time for phasing: 13 minutes 16 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:35 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim22beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim22beagle.txt) Running time for phasing: 15 minutes 15 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:59 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim23beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim23beagle.txt) Running time for phasing: 14 minutes 41 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:21 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim24beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim24beagle.txt) Running time for phasing: 18 minutes 2 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:46 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim25beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim25beagle.txt) Running time for phasing: 14 minutes 38 seconds Beagle version 3.3.2 (31 Oct 2011) finished