@----------------------------------------------------------@
|        PLINK!       |     v1.07      |   10/Aug/2009     |
|----------------------------------------------------------|
|  (C) 2009 Shaun Purcell, GNU General Public License, v2  |
|----------------------------------------------------------|
|  For documentation, citation & bug-report instructions:  |
|        http://pngu.mgh.harvard.edu/purcell/plink/        |
@----------------------------------------------------------@

Web-based version check ( --noweb to skip )
Recent cached web-check found... OK, v1.07 is current

Writing this text to log file [ plink.log ]
Analysis started: Thu Jan 19 23:44:29 2012

Options in effect:
	--file dataSim100plink
	--r
	--ld-window 500
	--out plink

10000 (of 10000) markers to be included from [ dataSim100plink.map ]
Warning, found 100 individuals with ambiguous sex codes
These individuals will be set to missing ( or use --allow-no-sex )
Writing list of these individuals to [ plink.nosex ]
100 individuals read from [ dataSim100plink.ped ] 
0 individuals with nonmissing phenotypes
Assuming a disease phenotype (1=unaff, 2=aff, 0=miss)
Missing phenotype value is also -9
0 cases, 0 controls and 100 missing
0 males, 0 females, and 100 of unspecified sex
Before frequency and genotyping pruning, there are 10000 SNPs
100 founders and 0 non-founders found
Total genotyping rate in remaining individuals is 1
0 SNPs failed missingness test ( GENO > 1 )
0 SNPs failed frequency test ( MAF < 0 )
After frequency and genotyping pruning, there are 10000 SNPs
After filtering, 0 cases, 0 controls and 100 missing
After filtering, 0 males, 0 females, and 100 of unspecified sex
Writing LD statistics to [ plink.ld ] 

Analysis finished: Thu Jan 19 23:44:51 2012