Results: Wilcoxon-Rank-Sum Wilcoxon-median t-test t-test-mean mean1 (std) mean2 (std) median1 median2 ######Matthews###### --->fabia-------beagle1--: 3.96e-18 0.751540 1.32e-94 0.737673 0.878203 (0.084606) 0.140529 (0.032238) 0.902139 0.140038 --->fabia-------beagle2--: 3.96e-18 0.558439 1.07e-72 0.554180 0.878203 (0.084606) 0.324022 (0.079040) 0.902139 0.316623 --->fabia-------plink----: 4.2e-18 0.365027 2.07e-53 0.358424 0.878203 (0.084606) 0.519778 (0.088582) 0.902139 0.525602 --->fabia-------germline1: 3.96e-18 0.902182 2.63e-103 0.884032 0.878203 (0.084606) -0.005830 (0.010019) 0.902139 -0.006078 --->fabia-------germline2: 3.96e-18 0.900877 8.5e-103 0.882783 0.878203 (0.084606) -0.004580 (0.010343) 0.902139 -0.007084 --->fabia-------dash-----: 3.96e-18 0.895838 8.64e-103 0.877444 0.878203 (0.084606) 0.000759 (0.000572) 0.902139 0.000751 --->beagle1-----beagle2--: 3.96e-18 -0.181953 2.14e-47 -0.183493 0.140529 (0.032238) 0.324022 (0.079040) 0.140038 0.316623 --->beagle1-----plink----: 3.96e-18 -0.377222 2.97e-65 -0.379249 0.140529 (0.032238) 0.519778 (0.088582) 0.140038 0.525602 --->beagle1-----germline1: 4.08e-18 0.144002 3.21e-65 0.146359 0.140529 (0.032238) -0.005830 (0.010019) 0.140038 -0.006078 --->beagle1-----germline2: 4.08e-18 0.144064 2.24e-64 0.145109 0.140529 (0.032238) -0.004580 (0.010343) 0.140038 -0.007084 --->beagle1-----dash-----: 4.08e-18 0.138157 3.36e-66 0.139771 0.140529 (0.032238) 0.000759 (0.000572) 0.140038 0.000751 --->beagle2-----plink----: 4.6e-18 -0.193256 9.99e-38 -0.195756 0.324022 (0.079040) 0.519778 (0.088582) 0.316623 0.525602 --->beagle2-----germline1: 4.08e-18 0.328710 9.52e-65 0.329852 0.324022 (0.079040) -0.005830 (0.010019) 0.316623 -0.006078 --->beagle2-----germline2: 4.08e-18 0.327341 3.71e-64 0.328602 0.324022 (0.079040) -0.004580 (0.010343) 0.316623 -0.007084 --->beagle2-----dash-----: 4.08e-18 0.322565 7.96e-64 0.323263 0.324022 (0.079040) 0.000759 (0.000572) 0.316623 0.000751 --->plink-------germline1: 3.96e-18 0.524724 2.48e-78 0.525608 0.519778 (0.088582) -0.005830 (0.010019) 0.525602 -0.006078 --->plink-------germline2: 3.96e-18 0.524804 1.07e-77 0.524358 0.519778 (0.088582) -0.004580 (0.010343) 0.525602 -0.007084 --->plink-------dash-----: 3.96e-18 0.518890 1.3e-78 0.519020 0.519778 (0.088582) 0.000759 (0.000572) 0.525602 0.000751 --->germline1---germline2: 4.13e-02 -0.002309 1.61e-01 -0.001250 -0.005830 (0.010019) -0.004580 (0.010343) -0.006078 -0.007084 --->germline1---dash-----: 1.5e-08 -0.006777 8.51e-10 -0.006588 -0.005830 (0.010019) 0.000759 (0.000572) -0.006078 0.000751 --->germline2---dash-----: 1.55e-06 -0.006334 6.74e-07 -0.005339 -0.004580 (0.010343) 0.000759 (0.000572) -0.007084 0.000751 ######F1###### --->fabia-------beagle1--: 3.96e-18 0.850313 4.04e-95 0.829490 0.871747 (0.096378) 0.042257 (0.017983) 0.899209 0.039880 --->fabia-------beagle2--: 3.96e-18 0.679417 3.25e-77 0.669913 0.871747 (0.096378) 0.201835 (0.081140) 0.899209 0.189016 --->fabia-------plink----: 4.08e-18 0.447567 7.7e-54 0.439185 0.871747 (0.096378) 0.432562 (0.112022) 0.899209 0.438756 --->fabia-------germline1: 3.96e-18 0.892378 5.66e-97 0.870685 0.871747 (0.096378) 0.001062 (0.000713) 0.899209 0.001001 --->fabia-------germline2: 3.96e-18 0.892486 5.99e-97 0.870749 0.871747 (0.096378) 0.000998 (0.001029) 0.899209 0.000799 --->fabia-------dash-----: 1.1e-17 0.280931 6.13e-47 0.258598 0.871747 (0.096378) 0.613149 (0.011342) 0.899209 0.613781 --->beagle1-----beagle2--: 5.78e-18 -0.155877 1.51e-38 -0.159577 0.042257 (0.017983) 0.201835 (0.081140) 0.039880 0.189016 --->beagle1-----plink----: 3.96e-18 -0.387324 1.39e-57 -0.390305 0.042257 (0.017983) 0.432562 (0.112022) 0.039880 0.438756 --->beagle1-----germline1: 4.08e-18 0.038811 2.69e-41 0.041195 0.042257 (0.017983) 0.001062 (0.000713) 0.039880 0.001001 --->beagle1-----germline2: 4.08e-18 0.038972 2.95e-41 0.041259 0.042257 (0.017983) 0.000998 (0.001029) 0.039880 0.000799 --->beagle1-----dash-----: 3.96e-18 -0.571959 1.52e-143 -0.570892 0.042257 (0.017983) 0.613149 (0.011342) 0.039880 0.613781 --->beagle2-----plink----: 5.51e-18 -0.228407 2.64e-37 -0.230728 0.201835 (0.081140) 0.432562 (0.112022) 0.189016 0.438756 --->beagle2-----germline1: 4.08e-18 0.196203 3.06e-44 0.200772 0.201835 (0.081140) 0.001062 (0.000713) 0.189016 0.001001 --->beagle2-----germline2: 4.08e-18 0.196145 3.09e-44 0.200836 0.201835 (0.081140) 0.000998 (0.001029) 0.189016 0.000799 --->beagle2-----dash-----: 3.96e-18 -0.415700 2.62e-72 -0.411315 0.201835 (0.081140) 0.613149 (0.011342) 0.189016 0.613781 --->plink-------germline1: 3.96e-18 0.431032 2.25e-61 0.431500 0.432562 (0.112022) 0.001062 (0.000713) 0.438756 0.001001 --->plink-------germline2: 3.96e-18 0.431376 2.52e-61 0.431564 0.432562 (0.112022) 0.000998 (0.001029) 0.438756 0.000799 --->plink-------dash-----: 4.41e-17 -0.182160 2.31e-29 -0.180587 0.432562 (0.112022) 0.613149 (0.011342) 0.438756 0.613781 --->germline1---germline2: 7.34e-01 3.57e-05 1e+00 0.000000 0.001062 (0.000713) 0.000998 (0.001029) 0.001001 0.000799 --->germline1---dash-----: 3.96e-18 -0.612134 1.97e-173 -0.612087 0.001062 (0.000713) 0.613149 (0.011342) 0.001001 0.613781 --->germline2---dash-----: 3.96e-18 -0.612177 1.62e-173 -0.612151 0.000998 (0.001029) 0.613149 (0.011342) 0.000799 0.613781 ######accuracy###### --->fabia-------beagle1--: 3.96e-18 0.035766 4.85e-54 0.035967 0.999905 (0.000120) 0.963938 (0.011236) 0.999928 0.963556 --->fabia-------beagle2--: 3.96e-18 0.006069 4.64e-36 0.006434 0.999905 (0.000120) 0.993472 (0.003265) 0.999928 0.994051 --->fabia-------plink----: 3.96e-18 0.001908 3.61e-40 0.001970 0.999905 (0.000120) 0.997935 (0.000887) 0.999928 0.998050 --->fabia-------germline1: 3.96e-18 0.391226 1.25e-157 0.391432 0.999905 (0.000120) 0.608473 (0.010489) 0.999928 0.609800 --->fabia-------germline2: 3.96e-18 0.231278 3.02e-133 0.231257 0.999905 (0.000120) 0.768649 (0.010928) 0.999928 0.768334 --->fabia-------dash-----: 3.96e-18 0.613457 1.46e-173 0.613353 0.999905 (0.000120) 0.386552 (0.011365) 0.999928 0.385987 --->beagle1-----beagle2--: 3.96e-18 -0.029366 2.19e-49 -0.029533 0.963938 (0.011236) 0.993472 (0.003265) 0.963556 0.994051 --->beagle1-----plink----: 3.96e-18 -0.033838 1.53e-51 -0.033997 0.963938 (0.011236) 0.997935 (0.000887) 0.963556 0.998050 --->beagle1-----germline1: 3.96e-18 0.355997 2.18e-133 0.355465 0.963938 (0.011236) 0.608473 (0.010489) 0.963556 0.609800 --->beagle1-----germline2: 3.96e-18 0.195766 1e-108 0.195290 0.963938 (0.011236) 0.768649 (0.010928) 0.963556 0.768334 --->beagle1-----dash-----: 3.96e-18 0.577120 1.46e-160 0.577386 0.963938 (0.011236) 0.386552 (0.011365) 0.963556 0.385987 --->beagle2-----plink----: 4.74e-18 -0.004041 9.72e-25 -0.004463 0.993472 (0.003265) 0.997935 (0.000887) 0.994051 0.998050 --->beagle2-----germline1: 3.96e-18 0.385101 5.7e-153 0.384999 0.993472 (0.003265) 0.608473 (0.010489) 0.994051 0.609800 --->beagle2-----germline2: 3.96e-18 0.225115 6.96e-129 0.224823 0.993472 (0.003265) 0.768649 (0.010928) 0.994051 0.768334 --->beagle2-----dash-----: 3.96e-18 0.606958 2.66e-173 0.606919 0.993472 (0.003265) 0.386552 (0.011365) 0.994051 0.385987 --->plink-------germline1: 3.96e-18 0.389186 2.13e-157 0.389462 0.997935 (0.000887) 0.608473 (0.010489) 0.998050 0.609800 --->plink-------germline2: 3.96e-18 0.229385 6.23e-133 0.229286 0.997935 (0.000887) 0.768649 (0.010928) 0.998050 0.768334 --->plink-------dash-----: 3.96e-18 0.611447 2.59e-173 0.611382 0.997935 (0.000887) 0.386552 (0.011365) 0.998050 0.385987 --->germline1---germline2: 3.96e-18 -0.160203 9.59e-146 -0.160176 0.608473 (0.010489) 0.768649 (0.010928) 0.609800 0.768334 --->germline1---dash-----: 3.96e-18 0.222277 5.67e-103 0.221921 0.608473 (0.010489) 0.386552 (0.011365) 0.609800 0.385987 --->germline2---dash-----: 3.96e-18 0.382210 3.09e-126 0.382096 0.768649 (0.010928) 0.386552 (0.011365) 0.768334 0.385987 ######FPR###### --->fabia-------beagle1--: 3.96e-18 -0.035840 4.61e-54 -0.036037 3.71e-05 (0.000120) 0.036074 (0.011249) 1.2e-05 0.036474 --->fabia-------beagle2--: 3.96e-18 -0.006116 3.18e-36 -0.006470 3.71e-05 (0.000120) 0.006507 (0.003271) 1.2e-05 0.005921 --->fabia-------plink----: 3.96e-18 -0.001941 7.74e-41 -0.002014 3.71e-05 (0.000120) 0.002051 (0.000889) 1.2e-05 0.001935 --->fabia-------germline1: 3.96e-18 -0.391090 1.74e-157 -0.391256 3.71e-05 (0.000120) 0.391294 (0.010515) 1.2e-05 0.389937 --->fabia-------germline2: 3.96e-18 -0.230901 4.78e-133 -0.230871 3.71e-05 (0.000120) 0.230909 (0.010957) 1.2e-05 0.231170 --->fabia-------dash-----: 3.96e-18 -0.999601 0e+00 -0.999583 3.71e-05 (0.000120) 0.999620 (0.000286) 1.2e-05 0.999624 --->beagle1-----beagle2--: 3.96e-18 0.029405 2.04e-49 0.029567 0.036074 (0.011249) 0.006507 (0.003271) 0.036474 0.005921 --->beagle1-----plink----: 3.96e-18 0.033859 1.59e-51 0.034023 0.036074 (0.011249) 0.002051 (0.000889) 0.036474 0.001935 --->beagle1-----germline1: 3.96e-18 -0.355762 2.76e-133 -0.355219 0.036074 (0.011249) 0.391294 (0.010515) 0.036474 0.389937 --->beagle1-----germline2: 3.96e-18 -0.195311 1.52e-108 -0.194835 0.036074 (0.011249) 0.230909 (0.010957) 0.036474 0.231170 --->beagle1-----dash-----: 3.96e-18 -0.963713 2.2e-193 -0.963546 0.036074 (0.011249) 0.999620 (0.000286) 0.036474 0.999624 --->beagle2-----plink----: 5.04e-18 0.004049 1.34e-24 0.004456 0.006507 (0.003271) 0.002051 (0.000889) 0.005921 0.001935 --->beagle2-----germline1: 3.96e-18 -0.384892 9.08e-153 -0.384786 0.006507 (0.003271) 0.391294 (0.010515) 0.005921 0.389937 --->beagle2-----germline2: 3.96e-18 -0.224706 1.25e-128 -0.224402 0.006507 (0.003271) 0.230909 (0.010957) 0.005921 0.231170 --->beagle2-----dash-----: 3.96e-18 -0.993422 7.32e-248 -0.993113 0.006507 (0.003271) 0.999620 (0.000286) 0.005921 0.999624 --->plink-------germline1: 3.96e-18 -0.388950 2.94e-157 -0.389242 0.002051 (0.000889) 0.391294 (0.010515) 0.001935 0.389937 --->plink-------germline2: 3.96e-18 -0.228979 9.75e-133 -0.228857 0.002051 (0.000889) 0.230909 (0.010957) 0.001935 0.231170 --->plink-------dash-----: 3.96e-18 -0.997603 7.19e-300 -0.997569 0.002051 (0.000889) 0.999620 (0.000286) 0.001935 0.999624 --->germline1---germline2: 3.96e-18 0.160398 7.75e-146 0.160385 0.391294 (0.010515) 0.230909 (0.010957) 0.389937 0.231170 --->germline1---dash-----: 3.96e-18 -0.608546 1.49e-176 -0.608326 0.391294 (0.010515) 0.999620 (0.000286) 0.389937 0.999624 --->germline2---dash-----: 3.96e-18 -0.768651 9.83e-185 -0.768711 0.230909 (0.010957) 0.999620 (0.000286) 0.231170 0.999624 ######FDR###### --->fabia-------beagle1--: 3.96e-18 -0.933667 8.12e-91 -0.910583 0.067741 (0.116622) 0.978324 (0.009551) 0.041487 0.979655 --->fabia-------beagle2--: 3.96e-18 -0.839024 1.21e-82 -0.817056 0.067741 (0.116622) 0.884797 (0.053394) 0.041487 0.895010 --->fabia-------plink----: 4.08e-18 -0.665902 1.06e-65 -0.647571 0.067741 (0.116622) 0.715312 (0.096569) 0.041487 0.717276 --->fabia-------germline1: 3.96e-18 -0.955051 1.01e-91 -0.931727 0.067741 (0.116622) 0.999468 (0.000357) 0.041487 0.999498 --->fabia-------germline2: 3.94e-18 -0.954910 1.04e-91 -0.931759 0.067741 (0.116622) 0.999499 (0.000516) 0.041487 0.999599 --->fabia-------dash-----: 4.46e-18 -0.568459 2.67e-69 -0.545707 0.067741 (0.116622) 0.613448 (0.011365) 0.041487 0.614013 --->beagle1-----beagle2--: 5.78e-18 0.089995 4.01e-34 0.093527 0.978324 (0.009551) 0.884797 (0.053394) 0.979655 0.895010 --->beagle1-----plink----: 3.96e-18 0.257453 6.1e-48 0.263012 0.978324 (0.009551) 0.715312 (0.096569) 0.979655 0.717276 --->beagle1-----germline1: 4.08e-18 -0.019829 4.57e-40 -0.021144 0.978324 (0.009551) 0.999468 (0.000357) 0.979655 0.999498 --->beagle1-----germline2: 4.08e-18 -0.019913 4.93e-40 -0.021175 0.978324 (0.009551) 0.999499 (0.000516) 0.979655 0.999599 --->beagle1-----dash-----: 3.96e-18 0.365170 9.49e-140 0.364876 0.978324 (0.009551) 0.613448 (0.011365) 0.979655 0.614013 --->beagle2-----plink----: 8.39e-18 0.165040 4.24e-33 0.169485 0.884797 (0.053394) 0.715312 (0.096569) 0.895010 0.717276 --->beagle2-----germline1: 4.08e-18 -0.110182 4.38e-39 -0.114671 0.884797 (0.053394) 0.999468 (0.000357) 0.895010 0.999498 --->beagle2-----germline2: 4.08e-18 -0.110141 4.36e-39 -0.114703 0.884797 (0.053394) 0.999499 (0.000516) 0.895010 0.999599 --->beagle2-----dash-----: 3.96e-18 0.275783 9.72e-72 0.271349 0.884797 (0.053394) 0.613448 (0.011365) 0.895010 0.614013 --->plink-------germline1: 3.96e-18 -0.280024 9.88e-51 -0.284156 0.715312 (0.096569) 0.999468 (0.000357) 0.717276 0.999498 --->plink-------germline2: 3.96e-18 -0.280021 1.04e-50 -0.284187 0.715312 (0.096569) 0.999499 (0.000516) 0.717276 0.999599 --->plink-------dash-----: 2.64e-13 0.106789 1.16e-17 0.101864 0.715312 (0.096569) 0.613448 (0.011365) 0.717276 0.614013 --->germline1---germline2: 7.46e-01 -1.68e-05 1e+00 0.000000 0.999468 (0.000357) 0.999499 (0.000516) 0.999498 0.999599 --->germline1---dash-----: 3.96e-18 0.385904 1.28e-153 0.386020 0.999468 (0.000357) 0.613448 (0.011365) 0.999498 0.614013 --->germline2---dash-----: 3.96e-18 0.385962 1.62e-153 0.386052 0.999499 (0.000516) 0.613448 (0.011365) 0.999599 0.614013 ######specifity###### --->fabia-------beagle1--: 3.96e-18 0.035836 4.61e-54 0.036037 0.999963 (0.000120) 0.963926 (0.011249) 0.999988 0.963526 --->fabia-------beagle2--: 3.96e-18 0.006095 3.18e-36 0.006470 0.999963 (0.000120) 0.993493 (0.003271) 0.999988 0.994079 --->fabia-------plink----: 3.96e-18 0.001948 7.74e-41 0.002014 0.999963 (0.000120) 0.997949 (0.000889) 0.999988 0.998065 --->fabia-------germline1: 3.96e-18 0.391050 1.74e-157 0.391256 0.999963 (0.000120) 0.608706 (0.010515) 0.999988 0.610063 --->fabia-------germline2: 3.96e-18 0.230900 4.78e-133 0.230871 0.999963 (0.000120) 0.769091 (0.010957) 0.999988 0.768830 --->fabia-------dash-----: 3.96e-18 0.804896 1.08e-73 0.796580 0.999963 (0.000120) 0.203383 (0.153167) 0.999988 0.194789 --->beagle1-----beagle2--: 3.96e-18 -0.029407 2.04e-49 -0.029567 0.963926 (0.011249) 0.993493 (0.003271) 0.963526 0.994079 --->beagle1-----plink----: 3.96e-18 -0.033868 1.59e-51 -0.034023 0.963926 (0.011249) 0.997949 (0.000889) 0.963526 0.998065 --->beagle1-----germline1: 3.96e-18 0.355786 2.76e-133 0.355219 0.963926 (0.011249) 0.608706 (0.010515) 0.963526 0.610063 --->beagle1-----germline2: 3.96e-18 0.195291 1.52e-108 0.194835 0.963926 (0.011249) 0.769091 (0.010957) 0.963526 0.768830 --->beagle1-----dash-----: 3.96e-18 0.768735 1.13e-71 0.760543 0.963926 (0.011249) 0.203383 (0.153167) 0.963526 0.194789 --->beagle2-----plink----: 5.04e-18 -0.003992 1.34e-24 -0.004456 0.993493 (0.003271) 0.997949 (0.000889) 0.994079 0.998065 --->beagle2-----germline1: 3.96e-18 0.384860 9.08e-153 0.384786 0.993493 (0.003271) 0.608706 (0.010515) 0.994079 0.610063 --->beagle2-----germline2: 3.96e-18 0.224708 1.25e-128 0.224402 0.993493 (0.003271) 0.769091 (0.010957) 0.994079 0.768830 --->beagle2-----dash-----: 3.96e-18 0.798582 2.13e-73 0.790110 0.993493 (0.003271) 0.203383 (0.153167) 0.994079 0.194789 --->plink-------germline1: 3.96e-18 0.388942 2.94e-157 0.389242 0.997949 (0.000889) 0.608706 (0.010515) 0.998065 0.610063 --->plink-------germline2: 3.96e-18 0.228954 9.75e-133 0.228857 0.997949 (0.000889) 0.769091 (0.010957) 0.998065 0.768830 --->plink-------dash-----: 3.96e-18 0.803033 1.52e-73 0.794565 0.997949 (0.000889) 0.203383 (0.153167) 0.998065 0.194789 --->germline1---germline2: 3.96e-18 -0.160418 7.75e-146 -0.160385 0.608706 (0.010515) 0.769091 (0.010957) 0.610063 0.768830 --->germline1---dash-----: 4.46e-18 0.413908 1.61e-46 0.405323 0.608706 (0.010515) 0.203383 (0.153167) 0.610063 0.194789 --->germline2---dash-----: 3.96e-18 0.574381 3e-59 0.565708 0.769091 (0.010957) 0.203383 (0.153167) 0.768830 0.194789 ######sensitivity###### --->fabia-------beagle1--: 5.54e-16 -0.137219 6.01e-15 -0.141752 0.838006 (0.113113) 0.979758 (0.103097) 0.874108 1.000000 --->fabia-------beagle2--: 3.45e-13 -0.124613 1.26e-11 -0.124182 0.838006 (0.113113) 0.962187 (0.110815) 0.874108 1.000000 --->fabia-------plink----: 3.96e-18 -0.123763 1.16e-23 -0.139729 0.838006 (0.113113) 0.977734 (0.019639) 0.874108 0.982583 --->fabia-------germline1: 4.08e-18 0.559103 1.27e-46 0.554392 0.838006 (0.113113) 0.283614 (0.182661) 0.874108 0.280999 --->fabia-------germline2: 3.96e-18 0.693155 1.06e-57 0.679248 0.838006 (0.113113) 0.158758 (0.162376) 0.874108 0.125952 --->fabia-------dash-----: 3.96e-18 -613099 1.4e-173 -613002 0.838 ( 0.113) 613002 ( 11345) 0.874 613570 --->beagle1-----beagle2--: 1e+00 0.000000 1.35e-04 0.017570 0.979758 (0.103097) 0.962187 (0.110815) 1.000000 1.000000 --->beagle1-----plink----: 4.88e-08 0.016347 8.43e-01 0.002023 0.979758 (0.103097) 0.977734 (0.019639) 1.000000 0.982583 --->beagle1-----germline1: 4.88e-18 0.706814 2.14e-54 0.696144 0.979758 (0.103097) 0.283614 (0.182661) 1.000000 0.280999 --->beagle1-----germline2: 3.97e-18 0.836621 7.91e-63 0.821000 0.979758 (0.103097) 0.158758 (0.162376) 1.000000 0.125952 --->beagle1-----dash-----: 3.96e-18 -613097 1.4e-173 -613001 0.98 ( 0.103) 613002 ( 11345) 1 613570 --->beagle2-----plink----: 1.83e-01 0.007201 1.56e-01 -0.015547 0.962187 (0.110815) 0.977734 (0.019639) 1.000000 0.982583 --->beagle2-----germline1: 5.03e-18 0.692246 9.62e-53 0.678574 0.962187 (0.110815) 0.283614 (0.182661) 1.000000 0.280999 --->beagle2-----germline2: 4.31e-18 0.826926 5.2e-61 0.803429 0.962187 (0.110815) 0.158758 (0.162376) 1.000000 0.125952 --->beagle2-----dash-----: 3.96e-18 -613099 1.4e-173 -613001 0.962 ( 0.111) 613002 ( 11345) 1 613570 --->plink-------germline1: 3.96e-18 0.699600 1.25e-61 0.694121 0.977734 (0.019639) 0.283614 (0.182661) 0.982583 0.280999 --->plink-------germline2: 3.96e-18 0.832923 1.62e-72 0.818976 0.977734 (0.019639) 0.158758 (0.162376) 0.982583 0.125952 --->plink-------dash-----: 3.96e-18 -613099 1.4e-173 -613001 0.978 ( 0.0196) 613002 ( 11345) 0.983 613570 --->germline1---germline2: 2.46e-12 0.183787 3.95e-13 0.124856 0.283614 (0.182661) 0.158758 (0.162376) 0.280999 0.125952 --->germline1---dash-----: 3.96e-18 -613100 1.4e-173 -613002 0.284 ( 0.183) 613002 ( 11345) 0.281 613570 --->germline2---dash-----: 3.96e-18 -613101 1.4e-173 -613002 0.159 ( 0.162) 613002 ( 11345) 0.126 613570 ######trueN###### --->fabia-------beagle1--: 3.96e-18 1035759 1.56e-196 1035963 2e+06 ( 253) 963227 ( 11232) 2e+06 962826 --->fabia-------beagle2--: 3.96e-18 1006039 1.72e-248 1006417 2e+06 ( 253) 992772 ( 3258) 2e+06 993378 --->fabia-------plink----: 3.96e-18 1e+06 2.3e-303 1e+06 2e+06 ( 253) 997225 ( 887) 2e+06 997287 --->fabia-------germline1: 3.96e-18 1390745 6.07e-212 1390925 2e+06 ( 253) 608265 ( 10494) 2e+06 609618 --->fabia-------germline2: 3.96e-18 1230700 7.06e-205 1230656 2e+06 ( 253) 768533 ( 10930) 2e+06 768286 --->fabia-------dash-----: 3.96e-18 1612987 3.08e-215 1612917 2e+06 ( 253) 386272 ( 11365) 2e+06 385687 --->beagle1-----beagle2--: 3.96e-18 -29394 2.05e-49 -29546 963227 ( 11232) 992772 ( 3258) 962826 993378 --->beagle1-----plink----: 3.96e-18 -33829 1.6e-51 -33998 963227 ( 11232) 997225 ( 887) 962826 997287 --->beagle1-----germline1: 3.96e-18 355523 2.82e-133 354962 963227 ( 11232) 608265 ( 10494) 962826 609618 --->beagle1-----germline2: 3.96e-18 195134 1.54e-108 194693 963227 ( 11232) 768533 ( 10930) 962826 768286 --->beagle1-----dash-----: 3.96e-18 576703 1.32e-160 576954 963227 ( 11232) 386272 ( 11365) 962826 385687 --->beagle2-----plink----: 5.04e-18 -4032 1.34e-24 -4453 992772 ( 3258) 997225 ( 887) 993378 997287 --->beagle2-----germline1: 3.96e-18 384601 9.65e-153 384508 992772 ( 3258) 608265 ( 10494) 993378 609618 --->beagle2-----germline2: 3.96e-18 224532 1.29e-128 224239 992772 ( 3258) 768533 ( 10930) 993378 768286 --->beagle2-----dash-----: 3.96e-18 606567 2.04e-173 606500 992772 ( 3258) 386272 ( 11365) 993378 385687 --->plink-------germline1: 3.96e-18 388681 3.2e-157 388960 997225 ( 887) 608265 ( 10494) 997287 609618 --->plink-------germline2: 3.96e-18 228796 1.02e-132 228692 997225 ( 887) 768533 ( 10930) 997287 768286 --->plink-------dash-----: 3.96e-18 610985 2.25e-173 610953 997225 ( 887) 386272 ( 11365) 997287 385687 --->germline1---germline2: 3.96e-18 -160289 7.67e-146 -160269 608265 ( 10494) 768533 ( 10930) 609618 768286 --->germline1---dash-----: 3.96e-18 222334 5.65e-103 221992 608265 ( 10494) 386272 ( 11365) 609618 385687 --->germline2---dash-----: 3.96e-18 382347 3e-126 382261 768533 ( 10930) 386272 ( 11365) 768286 385687 ######falseP###### --->fabia-------beagle1--: 3.96e-18 -35761 5.07e-54 -35974 74.2 ( 239) 36048 ( 11242) 24 36444 --->fabia-------beagle2--: 3.96e-18 -6048 4.92e-36 -6428 74.2 ( 239) 6502 ( 3268) 24 5917 --->fabia-------plink----: 3.96e-18 -1918 2.05e-39 -1976 74.2 ( 239) 2050 ( 888) 24 1933 --->fabia-------germline1: 3.96e-18 -390760 2.25e-157 -390936 74.2 ( 239) 391010 ( 10517) 24 389652 --->fabia-------germline2: 3.96e-18 -230705 6.27e-133 -230667 74.2 ( 239) 230741 ( 10954) 24 231006 --->fabia-------dash-----: 2.29e-16 -537 6.77e-34 -504 74.2 ( 239) 578 ( 131) 24 589 --->beagle1-----beagle2--: 3.96e-18 29394 2.05e-49 29546 36048 ( 11242) 6502 ( 3268) 36444 5917 --->beagle1-----plink----: 3.96e-18 33829 1.6e-51 33998 36048 ( 11242) 2050 ( 888) 36444 1933 --->beagle1-----germline1: 3.96e-18 -355521 2.82e-133 -354962 36048 ( 11242) 391010 ( 10517) 36444 389652 --->beagle1-----germline2: 3.96e-18 -195133 1.54e-108 -194693 36048 ( 11242) 230741 ( 10954) 36444 231006 --->beagle1-----dash-----: 3.96e-18 35284 1.98e-53 35470 36048 ( 11242) 578 ( 131) 36444 589 --->beagle2-----plink----: 5.04e-18 4032 1.34e-24 4453 6502 ( 3268) 2050 ( 888) 5917 1933 --->beagle2-----germline1: 3.96e-18 -384602 9.65e-153 -384508 6502 ( 3268) 391010 ( 10517) 5917 389652 --->beagle2-----germline2: 3.96e-18 -224532 1.29e-128 -224239 6502 ( 3268) 230741 ( 10954) 5917 231006 --->beagle2-----dash-----: 3.96e-18 5570 3.79e-33 5924 6502 ( 3268) 578 ( 131) 5917 589 --->plink-------germline1: 3.96e-18 -388681 3.2e-157 -388960 2050 ( 888) 391010 ( 10517) 1933 389652 --->plink-------germline2: 3.96e-18 -228793 1.02e-132 -228692 2050 ( 888) 230741 ( 10954) 1933 231006 --->plink-------dash-----: 5.35e-18 1405 3.69e-29 1471 2050 ( 888) 578 ( 131) 1933 589 --->germline1---germline2: 3.96e-18 160285 7.67e-146 160269 391010 ( 10517) 230741 ( 10954) 389652 231006 --->germline1---dash-----: 3.96e-18 390256 2.35e-157 390431 391010 ( 10517) 578 ( 131) 389652 589 --->germline2---dash-----: 3.96e-18 230197 7.05e-133 230163 230741 ( 10954) 578 ( 131) 231006 589 ######falseN###### --->fabia-------beagle1--: 5.08e-16 100 7.82e-17 102 115 ( 72.8) 13.6 ( 66.6) 95 0 --->fabia-------beagle2--: 2.59e-13 91.5 6.5e-13 89.2 115 ( 72.8) 26 ( 72.8) 95 0 --->fabia-------plink----: 3.95e-18 91.5 3.72e-26 99.8 115 ( 72.8) 15.3 ( 12.8) 95 12.5 --->fabia-------germline1: 4.08e-18 -405 2.01e-44 -402 115 ( 72.8) 517 ( 137) 95 518 --->fabia-------germline2: 3.95e-18 -503 2.43e-52 -495 115 ( 72.8) 610 ( 136) 95 642 --->fabia-------dash-----: 4.2e-02 -26.5 1.69e-02 -31.8 115 ( 72.8) 147 ( 111) 95 146 --->beagle1-----beagle2--: 1e+00 0.000000 1.78e-04 -12.370000 13.630000 (66.587932) 26.000000 (72.783059) 0.000000 0.000000 --->beagle1-----plink----: 5.22e-08 -12 7.98e-01 -1.69 13.6 ( 66.6) 15.3 ( 12.8) 0 12.5 --->beagle1-----germline1: 4.74e-18 -509 7.19e-54 -503 13.6 ( 66.6) 517 ( 137) 0 518 --->beagle1-----germline2: 4.33e-18 -611 8.95e-60 -596 13.6 ( 66.6) 610 ( 136) 0 642 --->beagle1-----dash-----: 7.98e-15 -147 3.71e-17 -133 13.6 ( 66.6) 147 ( 111) 0 146 --->beagle2-----plink----: 1.8e-01 -5 1.4e-01 10.7 26 ( 72.8) 15.3 ( 12.8) 0 12.5 --->beagle2-----germline1: 4.74e-18 -495 6.35e-52 -491 26 ( 72.8) 517 ( 137) 0 518 --->beagle2-----germline2: 4.33e-18 -596 1.01e-57 -584 26 ( 72.8) 610 ( 136) 0 642 --->beagle2-----dash-----: 3.73e-13 -135 5.79e-14 -121 26 ( 72.8) 147 ( 111) 0 146 --->plink-------germline1: 3.96e-18 -503 1.93e-59 -502 15.3 ( 12.8) 517 ( 137) 12.5 518 --->plink-------germline2: 3.95e-18 -604 5.35e-66 -595 15.3 ( 12.8) 610 ( 136) 12.5 642 --->plink-------dash-----: 2.1e-15 -128 2.82e-20 -132 15.3 ( 12.8) 147 ( 111) 12.5 146 --->germline1---germline2: 2.46e-12 -136 7.76e-13 -92.8 517 ( 137) 610 ( 136) 518 642 --->germline1---dash-----: 2.67e-17 373 1.97e-31 370 517 ( 137) 147 ( 111) 518 146 --->germline2---dash-----: 8.91e-18 475 2.3e-40 463 610 ( 136) 147 ( 111) 642 146 ######trueP###### --->fabia-------beagle1--: 5.51e-13 -93.5 3.93e-13 -90.4 621 ( 124) 712 ( 111) 634 716 --->fabia-------beagle2--: 1.78e-10 -85 8.05e-10 -78 621 ( 124) 699 ( 117) 634 699 --->fabia-------plink----: 4.56e-14 -85 4.29e-19 -88.7 621 ( 124) 710 ( 88) 634 716 --->fabia-------germline1: 4.08e-18 415 2.49e-45 413 621 ( 124) 208 ( 140) 634 199 --->fabia-------germline2: 3.95e-18 513 8.07e-53 506 621 ( 124) 116 ( 120) 634 94 --->fabia-------dash-----: 3.95e-18 629 2.99e-72 621 621 ( 124) 0.000296 ( 0.00156) 634 0 --->beagle1-----beagle2--: 7.25e-04 73.9 1.78e-04 12.4 712 ( 111) 699 ( 117) 716 699 --->beagle1-----plink----: 5.22e-08 12 7.98e-01 1.69 712 ( 111) 710 ( 88) 716 716 --->beagle1-----germline1: 4.74e-18 509 7.19e-54 503 712 ( 111) 208 ( 140) 716 199 --->beagle1-----germline2: 4.33e-18 611 8.95e-60 596 712 ( 111) 116 ( 120) 716 94 --->beagle1-----dash-----: 5.78e-18 720 2.61e-82 712 712 ( 111) 0.000296 ( 0.00156) 716 0 --->beagle2-----plink----: 1.8e-01 5 1.4e-01 -10.7 699 ( 117) 710 ( 88) 699 716 --->beagle2-----germline1: 4.74e-18 495 6.35e-52 491 699 ( 117) 208 ( 140) 699 199 --->beagle2-----germline2: 4.33e-18 596 1.01e-57 584 699 ( 117) 116 ( 120) 699 94 --->beagle2-----dash-----: 5.78e-18 707 1.75e-79 699 699 ( 117) 0.000296 ( 0.00156) 699 0 --->plink-------germline1: 3.96e-18 503 1.93e-59 502 710 ( 88) 208 ( 140) 716 199 --->plink-------germline2: 3.95e-18 604 5.35e-66 595 710 ( 88) 116 ( 120) 716 94 --->plink-------dash-----: 3.95e-18 710 4e-92 710 710 ( 88) 0.000296 ( 0.00156) 716 0 --->germline1---germline2: 2.46e-12 136 7.76e-13 92.8 208 ( 140) 116 ( 120) 199 94 --->germline1---dash-----: 2.73e-17 214 6.64e-27 208 208 ( 140) 0.000296 ( 0.00156) 199 0 --->germline2---dash-----: 3.17e-14 138 7.07e-16 116 116 ( 120) 0.000296 ( 0.00156) 94 0 ######MatthewsSnps###### --->fabia-------beagle1--: 3.96e-18 0.743852 1.83e-85 0.730316 0.800171 (0.098316) 0.069855 (0.034240) 0.818867 0.065110 --->fabia-------beagle2--: 3.96e-18 0.494697 5.09e-60 0.491257 0.800171 (0.098316) 0.308914 (0.094504) 0.818867 0.312925 --->fabia-------plink----: 5.51e-18 0.380568 2.78e-49 0.370013 0.800171 (0.098316) 0.430158 (0.094721) 0.818867 0.420759 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.800171 (0.098316) 0.000000 (0.000000) 0.818867 0.000000 --->fabia-------germline2: 3.94e-18 0.811990 2.23e-92 0.799372 0.800171 (0.098316) 0.000799 (0.002828) 0.818867 0.000000 --->fabia-------dash-----: 3.94e-18 0.773365 2.26e-90 0.760950 0.800171 (0.098316) 0.039220 (2.81e-05) 0.818867 0.039216 --->beagle1-----beagle2--: 9.75e-18 -0.239518 2.03e-45 -0.239059 0.069855 (0.034240) 0.308914 (0.094504) 0.065110 0.312925 --->beagle1-----plink----: 3.96e-18 -0.356477 3.03e-56 -0.360304 0.069855 (0.034240) 0.430158 (0.094721) 0.065110 0.420759 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.069855 (0.034240) 0.000000 (0.000000) 0.065110 0.000000 --->beagle1-----germline2: 4.33e-18 0.067782 2.66e-36 0.069056 0.069855 (0.034240) 0.000799 (0.002828) 0.065110 0.000000 --->beagle1-----dash-----: 4.28e-13 0.029354 2.15e-14 0.030634 0.069855 (0.034240) 0.039220 (2.81e-05) 0.065110 0.039216 --->beagle2-----plink----: 1.01e-14 -0.115704 1.01e-16 -0.121244 0.308914 (0.094504) 0.430158 (0.094721) 0.312925 0.420759 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.308914 (0.094504) 0.000000 (0.000000) 0.312925 0.000000 --->beagle2-----germline2: 4.08e-18 0.309105 1.06e-54 0.308115 0.308914 (0.094504) 0.000799 (0.002828) 0.312925 0.000000 --->beagle2-----dash-----: 4.6e-18 0.270718 1.44e-49 0.269694 0.308914 (0.094504) 0.039220 (2.81e-05) 0.312925 0.039216 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.430158 (0.094721) 0.000000 (0.000000) 0.420759 0.000000 --->plink-------germline2: 3.96e-18 0.424621 3.5e-68 0.429360 0.430158 (0.094721) 0.000799 (0.002828) 0.420759 0.000000 --->plink-------dash-----: 3.96e-18 0.386297 3.42e-64 0.390938 0.430158 (0.094721) 0.039220 (2.81e-05) 0.420759 0.039216 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000799 (0.002828) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.039220 (2.81e-05) 0.000000 0.039216 --->germline2---dash-----: 1.81e-21 -0.039181 1.33e-114 -0.038422 0.000799 (0.002828) 0.039220 (2.81e-05) 0.000000 0.039216 ######F1Snps###### --->fabia-------beagle1--: 3.96e-18 0.748262 9.36e-82 0.732237 0.782695 (0.113926) 0.050458 (0.011674) 0.805959 0.047170 --->fabia-------beagle2--: 3.96e-18 0.578715 1.12e-64 0.569605 0.782695 (0.113926) 0.213090 (0.085972) 0.805959 0.207836 --->fabia-------plink----: 5.51e-18 0.439002 8.31e-49 0.426395 0.782695 (0.113926) 0.356300 (0.107934) 0.805959 0.338969 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.782695 (0.113926) 0.039216 (0.000000) 0.805959 0.039216 --->fabia-------germline2: 3.94e-18 0.758319 3.54e-83 0.743464 0.782695 (0.113926) 0.039232 (7.81e-05) 0.805959 0.039216 --->fabia-------dash-----: 3.94e-18 0.777484 3.15e-84 0.762573 0.782695 (0.113926) 0.020122 (0.000728) 0.805959 0.020000 --->beagle1-----beagle2--: 4.89e-18 -0.158157 2.9e-35 -0.162632 0.050458 (0.011674) 0.213090 (0.085972) 0.047170 0.207836 --->beagle1-----plink----: 3.96e-18 -0.299343 8.94e-49 -0.305842 0.050458 (0.011674) 0.356300 (0.107934) 0.047170 0.338969 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.050458 (0.011674) 0.039216 (0.000000) 0.047170 0.039216 --->beagle1-----germline2: 4.33e-18 0.009821 7.74e-16 0.011227 0.050458 (0.011674) 0.039232 (7.81e-05) 0.047170 0.039216 --->beagle1-----dash-----: 3.96e-18 0.029012 1.83e-46 0.030336 0.050458 (0.011674) 0.020122 (0.000728) 0.047170 0.020000 --->beagle2-----plink----: 9.46e-16 -0.138797 1.64e-19 -0.143210 0.213090 (0.085972) 0.356300 (0.107934) 0.207836 0.338969 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.213090 (0.085972) 0.039216 (0.000000) 0.207836 0.039216 --->beagle2-----germline2: 4.33e-18 0.170057 6.26e-37 0.173858 0.213090 (0.085972) 0.039232 (7.81e-05) 0.207836 0.039216 --->beagle2-----dash-----: 4.08e-18 0.189218 1.36e-40 0.192968 0.213090 (0.085972) 0.020122 (0.000728) 0.207836 0.020000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.356300 (0.107934) 0.039216 (0.000000) 0.338969 0.039216 --->plink-------germline2: 3.96e-18 0.310303 1.1e-50 0.317068 0.356300 (0.107934) 0.039232 (7.81e-05) 0.338969 0.039216 --->plink-------dash-----: 3.96e-18 0.329002 5.7e-53 0.336178 0.356300 (0.107934) 0.020122 (0.000728) 0.338969 0.020000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.039216 (0.000000) 0.039232 (7.81e-05) 0.039216 0.039216 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.039216 (0.000000) 0.020122 (0.000728) 0.039216 0.020000 --->germline2---dash-----: 1.81e-21 0.019196 3.52e-146 0.019110 0.039232 (7.81e-05) 0.020122 (0.000728) 0.039216 0.020000 ######accuracySnps###### --->fabia-------beagle1--: 3.96e-18 0.780002 2.51e-78 0.773288 0.992657 (0.004636) 0.219369 (0.133202) 0.993300 0.192000 --->fabia-------beagle2--: 3.96e-18 0.160824 1.71e-31 0.173357 0.992657 (0.004636) 0.819300 (0.100684) 0.993300 0.847500 --->fabia-------plink----: 4.08e-18 0.065248 1.39e-37 0.067556 0.992657 (0.004636) 0.925101 (0.032484) 0.993300 0.927950 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.992657 (0.004636) 0.020000 (0.000000) 0.993300 0.020000 --->fabia-------germline2: 3.94e-18 0.973068 5.01e-227 0.972242 0.992657 (0.004636) 0.020415 (0.002000) 0.993300 0.020000 --->fabia-------dash-----: 4.06e-18 -0.006646 4.33e-28 -0.007219 0.992657 (0.004636) 0.999876 (0.000743) 0.993300 1.000000 --->beagle1-----beagle2--: 3.96e-18 -0.606669 3.51e-65 -0.599931 0.219369 (0.133202) 0.819300 (0.100684) 0.192000 0.847500 --->beagle1-----plink----: 3.96e-18 -0.712901 4.28e-72 -0.705732 0.219369 (0.133202) 0.925101 (0.032484) 0.192000 0.927950 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.219369 (0.133202) 0.020000 (0.000000) 0.192000 0.020000 --->beagle1-----germline2: 4.33e-18 0.192445 4.7e-27 0.198954 0.219369 (0.133202) 0.020415 (0.002000) 0.192000 0.020000 --->beagle1-----dash-----: 3.96e-18 -0.787219 1.2e-78 -0.780507 0.219369 (0.133202) 0.999876 (0.000743) 0.192000 1.000000 --->beagle2-----plink----: 6.44e-17 -0.093066 1.9e-17 -0.105801 0.819300 (0.100684) 0.925101 (0.032484) 0.847500 0.927950 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.819300 (0.100684) 0.020000 (0.000000) 0.847500 0.020000 --->beagle2-----germline2: 3.96e-18 0.811078 2.4e-91 0.798885 0.819300 (0.100684) 0.020415 (0.002000) 0.847500 0.020000 --->beagle2-----dash-----: 3.96e-18 -0.168568 6.88e-33 -0.180576 0.819300 (0.100684) 0.999876 (0.000743) 0.847500 1.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.925101 (0.032484) 0.020000 (0.000000) 0.927950 0.020000 --->plink-------germline2: 3.96e-18 0.906949 2.81e-145 0.904686 0.925101 (0.032484) 0.020415 (0.002000) 0.927950 0.020000 --->plink-------dash-----: 3.96e-18 -0.072231 1.95e-41 -0.074775 0.925101 (0.032484) 0.999876 (0.000743) 0.927950 1.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.020000 (0.000000) 0.020415 (0.002000) 0.020000 0.020000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.020000 (0.000000) 0.999876 (0.000743) 0.020000 1.000000 --->germline2---dash-----: 1.81e-21 -0.980000 1.03e-256 -0.979461 0.020415 (0.002000) 0.999876 (0.000743) 0.020000 1.000000 ######FPRSnps###### --->fabia-------beagle1--: 3.96e-18 -0.802653 8.48e-79 -0.795802 0.000760 (0.004252) 0.796562 (0.135921) 0.000000 0.824490 --->fabia-------beagle2--: 3.96e-18 -0.170709 8.15e-33 -0.183423 0.000760 (0.004252) 0.184184 (0.102443) 0.000000 0.155612 --->fabia-------plink----: 3.96e-18 -0.071658 7.41e-40 -0.073996 0.000760 (0.004252) 0.074756 (0.033318) 0.000000 0.072449 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.000760 (0.004252) 1.000000 (0.000000) 0.000000 1.000000 --->fabia-------germline2: 2.47e-21 -1.000000 3.79e-230 -0.998816 0.000760 (0.004252) 0.999577 (0.002041) 0.000000 1.000000 --->fabia-------dash-----: 6.69e-22 -0.980000 6.57e-236 -0.979237 0.000760 (0.004252) 0.979998 (1.46e-05) 0.000000 0.980000 --->beagle1-----beagle2--: 3.96e-18 0.619071 2.58e-65 0.612379 0.796562 (0.135921) 0.184184 (0.102443) 0.824490 0.155612 --->beagle1-----plink----: 3.96e-18 0.729421 3.01e-72 0.721806 0.796562 (0.135921) 0.074756 (0.033318) 0.824490 0.072449 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.796562 (0.135921) 1.000000 (0.000000) 0.824490 1.000000 --->beagle1-----germline2: 4.33e-18 -0.196382 4.7e-27 -0.203014 0.796562 (0.135921) 0.999577 (0.002041) 0.824490 1.000000 --->beagle1-----dash-----: 7.44e-18 -0.176727 3.61e-24 -0.183435 0.796562 (0.135921) 0.979998 (1.46e-05) 0.824490 0.980000 --->beagle2-----plink----: 5.18e-17 0.096516 9.91e-18 0.109428 0.184184 (0.102443) 0.074756 (0.033318) 0.155612 0.072449 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.184184 (0.102443) 1.000000 (0.000000) 0.155612 1.000000 --->beagle2-----germline2: 3.96e-18 -0.827630 1.77e-91 -0.815393 0.184184 (0.102443) 0.999577 (0.002041) 0.155612 1.000000 --->beagle2-----dash-----: 3.96e-18 -0.807850 1.58e-90 -0.795814 0.184184 (0.102443) 0.979998 (1.46e-05) 0.155612 0.980000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.074756 (0.033318) 1.000000 (0.000000) 0.072449 1.000000 --->plink-------germline2: 3.96e-18 -0.927086 4.04e-145 -0.924820 0.074756 (0.033318) 0.999577 (0.002041) 0.072449 1.000000 --->plink-------dash-----: 3.96e-18 -0.907640 4.8e-144 -0.905241 0.074756 (0.033318) 0.979998 (1.46e-05) 0.072449 0.980000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.999577 (0.002041) 1.000000 1.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.979998 (1.46e-05) 1.000000 0.980000 --->germline2---dash-----: 1.81e-21 0.019987 9.97e-100 0.019579 0.999577 (0.002041) 0.979998 (1.46e-05) 1.000000 0.980000 ######FDRSnps###### --->fabia-------beagle1--: 3.96e-18 -0.974145 3.69e-98 -0.953655 0.020425 (0.103108) 0.974081 (0.006292) 0.000000 0.975845 --->fabia-------beagle2--: 3.96e-18 -0.876888 6.31e-89 -0.857682 0.020425 (0.103108) 0.878108 (0.055598) 0.000000 0.884027 --->fabia-------plink----: 3.96e-18 -0.775047 7.32e-75 -0.751555 0.020425 (0.103108) 0.771980 (0.095961) 0.000000 0.788290 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.020425 (0.103108) 0.980000 (0.000000) 0.000000 0.980000 --->fabia-------germline2: 2.47e-21 -0.980000 3.45e-98 -0.959566 0.020425 (0.103108) 0.979992 (4.06e-05) 0.000000 0.980000 --->fabia-------dash-----: 1e+00 0.000000 5.18e-02 0.020301 0.020425 (0.103108) 0.000124 (0.000743) 0.000000 0.000000 --->beagle1-----beagle2--: 4.89e-18 0.091738 4.02e-32 0.095973 0.974081 (0.006292) 0.878108 (0.055598) 0.975845 0.884027 --->beagle1-----plink----: 3.96e-18 0.192525 4.11e-38 0.202100 0.974081 (0.006292) 0.771980 (0.095961) 0.975845 0.788290 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.974081 (0.006292) 0.980000 (0.000000) 0.975845 0.980000 --->beagle1-----germline2: 4.33e-18 -0.005154 2.35e-15 -0.005911 0.974081 (0.006292) 0.979992 (4.06e-05) 0.975845 0.980000 --->beagle1-----dash-----: 3.96e-18 0.974732 2.07e-217 0.973956 0.974081 (0.006292) 0.000124 (0.000743) 0.975845 0.000000 --->beagle2-----plink----: 7.77e-16 0.099971 5.41e-17 0.106127 0.878108 (0.055598) 0.771980 (0.095961) 0.884027 0.788290 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.878108 (0.055598) 0.980000 (0.000000) 0.884027 0.980000 --->beagle2-----germline2: 4.33e-18 -0.098235 1.4e-33 -0.101884 0.878108 (0.055598) 0.979992 (4.06e-05) 0.884027 0.980000 --->beagle2-----dash-----: 3.96e-18 0.881729 8.22e-121 0.877983 0.878108 (0.055598) 0.000124 (0.000743) 0.884027 0.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.771980 (0.095961) 0.980000 (0.000000) 0.788290 0.980000 --->plink-------germline2: 3.96e-18 -0.198204 2.26e-39 -0.208012 0.771980 (0.095961) 0.979992 (4.06e-05) 0.788290 0.980000 --->plink-------dash-----: 3.96e-18 0.781614 5.53e-92 0.771856 0.771980 (0.095961) 0.000124 (0.000743) 0.788290 0.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.980000 (0.000000) 0.979992 (4.06e-05) 0.980000 0.980000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.980000 (0.000000) 0.000124 (0.000743) 0.980000 0.000000 --->germline2---dash-----: 1.81e-21 0.980000 4.25e-309 0.979867 0.979992 (4.06e-05) 0.000124 (0.000743) 0.980000 0.000000 ######specifitySnps###### --->fabia-------beagle1--: 3.96e-18 0.802653 8.48e-79 0.795802 0.999240 (0.004252) 0.203438 (0.135921) 1.000000 0.175510 --->fabia-------beagle2--: 3.96e-18 0.170738 8.15e-33 0.183423 0.999240 (0.004252) 0.815816 (0.102443) 1.000000 0.844388 --->fabia-------plink----: 3.96e-18 0.071670 7.41e-40 0.073996 0.999240 (0.004252) 0.925244 (0.033318) 1.000000 0.927551 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.999240 (0.004252) 0.000000 (0.000000) 1.000000 0.000000 --->fabia-------germline2: 2.47e-21 1.000000 3.79e-230 0.998816 0.999240 (0.004252) 0.000423 (0.002041) 1.000000 0.000000 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.999240 (0.004252) 1.000000 (0.000000) 1.000000 1.000000 --->beagle1-----beagle2--: 3.96e-18 -0.619036 2.58e-65 -0.612379 0.203438 (0.135921) 0.815816 (0.102443) 0.175510 0.844388 --->beagle1-----plink----: 3.96e-18 -0.729455 3.01e-72 -0.721806 0.203438 (0.135921) 0.925244 (0.033318) 0.175510 0.927551 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.203438 (0.135921) 0.000000 (0.000000) 0.175510 0.000000 --->beagle1-----germline2: 4.33e-18 0.196370 4.7e-27 0.203014 0.203438 (0.135921) 0.000423 (0.002041) 0.175510 0.000000 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.203438 (0.135921) 1.000000 (0.000000) 0.175510 1.000000 --->beagle2-----plink----: 5.18e-17 -0.096508 9.91e-18 -0.109428 0.815816 (0.102443) 0.925244 (0.033318) 0.844388 0.927551 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.815816 (0.102443) 0.000000 (0.000000) 0.844388 0.000000 --->beagle2-----germline2: 3.96e-18 0.827644 1.77e-91 0.815393 0.815816 (0.102443) 0.000423 (0.002041) 0.844388 0.000000 --->beagle2-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.815816 (0.102443) 1.000000 (0.000000) 0.844388 1.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.925244 (0.033318) 0.000000 (0.000000) 0.927551 0.000000 --->plink-------germline2: 3.96e-18 0.927052 4.04e-145 0.924820 0.925244 (0.033318) 0.000423 (0.002041) 0.927551 0.000000 --->plink-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.925244 (0.033318) 1.000000 (0.000000) 0.927551 1.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000423 (0.002041) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 1.000000 (0.000000) 0.000000 1.000000 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000423 (0.002041) 1.000000 (0.000000) 0.000000 1.000000 ######sensitivitySnps###### --->fabia-------beagle1--: 1e+00 0.000000 1e+00 0.000000 0.670100 (0.135760) 1.000000 (0.000000) 0.680000 1.000000 --->fabia-------beagle2--: 7.01e-17 -0.317560 6.29e-35 -0.319900 0.670100 (0.135760) 0.990000 (0.100000) 0.680000 1.000000 --->fabia-------plink----: 5.76e-18 -0.239940 2.41e-33 -0.248000 0.670100 (0.135760) 0.918100 (0.085339) 0.680000 0.940000 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.670100 (0.135760) 1.000000 (0.000000) 0.680000 1.000000 --->fabia-------germline2: 1e+00 0.000000 1e+00 0.000000 0.670100 (0.135760) 1.000000 (0.000000) 0.680000 1.000000 --->fabia-------dash-----: 2.14e-14 0.667539 4.53e-01 -0.549900 0.670100 (0.135760) 1.220000 (7.284382) 0.680000 0.000000 --->beagle1-----beagle2--: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.990000 (0.100000) 1.000000 1.000000 --->beagle1-----plink----: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 0.918100 (0.085339) 1.000000 0.940000 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 1.000000 (0.000000) 1.000000 1.000000 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 1.000000 (0.000000) 1.000000 1.000000 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 1.220000 (7.284382) 1.000000 0.000000 --->beagle2-----plink----: 3.21e-12 0.104963 5.56e-07 0.071900 0.990000 (0.100000) 0.918100 (0.085339) 1.000000 0.940000 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.990000 (0.100000) 1.000000 (0.000000) 1.000000 1.000000 --->beagle2-----germline2: 1e+00 0.000000 1e+00 0.000000 0.990000 (0.100000) 1.000000 (0.000000) 1.000000 1.000000 --->beagle2-----dash-----: 1.48e-17 1.000000 7.53e-01 -0.230000 0.990000 (0.100000) 1.220000 (7.284382) 1.000000 0.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.918100 (0.085339) 1.000000 (0.000000) 0.940000 1.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 0.918100 (0.085339) 1.000000 (0.000000) 0.940000 1.000000 --->plink-------dash-----: 2.41e-14 0.924968 6.8e-01 -0.301900 0.918100 (0.085339) 1.220000 (7.284382) 0.940000 0.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 1.000000 (0.000000) 1.000000 1.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 1.220000 (7.284382) 1.000000 0.000000 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 1.000000 (0.000000) 1.220000 (7.284382) 1.000000 0.000000 ######trueNSnps###### --->fabia-------beagle1--: 3.96e-18 7866 8.48e-79 7799 9793 ( 41.7) 1994 ( 1332) 9800 1720 --->fabia-------beagle2--: 3.96e-18 1673 8.15e-33 1798 9793 ( 41.7) 7995 ( 1004) 9800 8275 --->fabia-------plink----: 3.96e-18 702 7.41e-40 725 9793 ( 41.7) 9067 ( 327) 9800 9090 --->fabia-------germline1: 1e+00 0 1e+00 0 9793 ( 41.7) 0 ( 0) 9800 0 --->fabia-------germline2: 2.47e-21 9800 3.79e-230 9788 9793 ( 41.7) 4.15 ( 20) 9800 0 --->fabia-------dash-----: 1e+00 0 1.46e-01 -6.23 9793 ( 41.7) 9799 ( 7.28) 9800 9800 --->beagle1-----beagle2--: 3.96e-18 -6067 2.58e-65 -6001 1994 ( 1332) 7995 ( 1004) 1720 8275 --->beagle1-----plink----: 3.96e-18 -7149 3.01e-72 -7074 1994 ( 1332) 9067 ( 327) 1720 9090 --->beagle1-----germline1: 1e+00 0 1e+00 0 1994 ( 1332) 0 ( 0) 1720 0 --->beagle1-----germline2: 4.33e-18 1924 4.7e-27 1990 1994 ( 1332) 4.15 ( 20) 1720 0 --->beagle1-----dash-----: 3.96e-18 -7872 1.2e-78 -7805 1994 ( 1332) 9799 ( 7.28) 1720 9800 --->beagle2-----plink----: 5.17e-17 -946 9.91e-18 -1072 7995 ( 1004) 9067 ( 327) 8275 9090 --->beagle2-----germline1: 1e+00 0 1e+00 0 7995 ( 1004) 0 ( 0) 8275 0 --->beagle2-----germline2: 3.96e-18 8111 1.77e-91 7991 7995 ( 1004) 4.15 ( 20) 8275 0 --->beagle2-----dash-----: 3.96e-18 -1686 6.01e-33 -1804 7995 ( 1004) 9799 ( 7.28) 8275 9800 --->plink-------germline1: 1e+00 0 1e+00 0 9067 ( 327) 0 ( 0) 9090 0 --->plink-------germline2: 3.96e-18 9085 4.04e-145 9063 9067 ( 327) 4.15 ( 20) 9090 0 --->plink-------dash-----: 3.96e-18 -708 1.88e-40 -731 9067 ( 327) 9799 ( 7.28) 9090 9800 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 4.150000 (19.997664) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0 1e+00 0 0 ( 0) 9799 ( 7.28) 0 9800 --->germline2---dash-----: 1.81e-21 -9800 6.28e-257 -9795 4.15 ( 20) 9799 ( 7.28) 0 9800 ######falsePSnps###### --->fabia-------beagle1--: 3.96e-18 -7866 8.48e-79 -7799 7.45 ( 41.7) 7806 ( 1332) 0 8080 --->fabia-------beagle2--: 3.96e-18 -1673 8.15e-33 -1798 7.45 ( 41.7) 1805 ( 1004) 0 1525 --->fabia-------plink----: 3.96e-18 -702 7.41e-40 -725 7.45 ( 41.7) 733 ( 327) 0 710 --->fabia-------germline1: 1e+00 0 1e+00 0 7.45 ( 41.7) 9800 ( 0) 0 9800 --->fabia-------germline2: 2.47e-21 -9800 3.79e-230 -9788 7.45 ( 41.7) 9796 ( 20) 0 9800 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 7.450000 (41.670515) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----beagle2--: 3.96e-18 6067 2.58e-65 6001 7806 ( 1332) 1805 ( 1004) 8080 1525 --->beagle1-----plink----: 3.96e-18 7149 3.01e-72 7074 7806 ( 1332) 733 ( 327) 8080 710 --->beagle1-----germline1: 1e+00 0 1e+00 0 7806 ( 1332) 9800 ( 0) 8080 9800 --->beagle1-----germline2: 4.33e-18 -1924 4.7e-27 -1990 7806 ( 1332) 9796 ( 20) 8080 9800 --->beagle1-----dash-----: 1e+00 0 1e+00 0 7806 ( 1332) 0 ( 0) 8080 0 --->beagle2-----plink----: 5.17e-17 946 9.91e-18 1072 1805 ( 1004) 733 ( 327) 1525 710 --->beagle2-----germline1: 1e+00 0 1e+00 0 1805 ( 1004) 9800 ( 0) 1525 9800 --->beagle2-----germline2: 3.96e-18 -8111 1.77e-91 -7991 1805 ( 1004) 9796 ( 20) 1525 9800 --->beagle2-----dash-----: 1e+00 0 1e+00 0 1805 ( 1004) 0 ( 0) 1525 0 --->plink-------germline1: 1e+00 0 1e+00 0 733 ( 327) 9800 ( 0) 710 9800 --->plink-------germline2: 3.96e-18 -9085 4.04e-145 -9063 733 ( 327) 9796 ( 20) 710 9800 --->plink-------dash-----: 1e+00 0 1e+00 0 733 ( 327) 0 ( 0) 710 0 --->germline1---germline2: 1e+00 0 1e+00 0 9800 ( 0) 9796 ( 20) 9800 9800 --->germline1---dash-----: 1e+00 0 1e+00 0 9800 ( 0) 0 ( 0) 9800 0 --->germline2---dash-----: 1e+00 0 1e+00 0 9796 ( 20) 0 ( 0) 9800 0 ######falseNSnps###### --->fabia-------beagle1--: 1e+00 0 1e+00 0 66 ( 27.2) 0 ( 0) 64 0 --->fabia-------beagle2--: 7.01e-17 63.5 6.29e-35 64 66 ( 27.2) 2 ( 20) 64 0 --->fabia-------plink----: 5.76e-18 48 2.41e-33 49.6 66 ( 27.2) 16.4 ( 17.1) 64 12 --->fabia-------germline1: 1e+00 0 1e+00 0 66 ( 27.2) 0 ( 0) 64 0 --->fabia-------germline2: 1e+00 0 1e+00 0 66 ( 27.2) 0 ( 0) 64 0 --->fabia-------dash-----: 1e+00 0 1e+00 0 66 ( 27.2) 200 ( 0) 64 200 --->beagle1-----beagle2--: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 2.000000 (20.000000) 0.000000 0.000000 --->beagle1-----plink----: 1e+00 0 1e+00 0 0 ( 0) 16.4 ( 17.1) 0 12 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----dash-----: 1e+00 0 1e+00 0 0 ( 0) 200 ( 0) 0 200 --->beagle2-----plink----: 3.21e-12 -21 5.56e-07 -14.4 2 ( 20) 16.4 ( 17.1) 0 12 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 2.000000 (20.000000) 0.000000 (0.000000) 0.000000 0.000000 --->beagle2-----germline2: 1e+00 0.000000 1e+00 0.000000 2.000000 (20.000000) 0.000000 (0.000000) 0.000000 0.000000 --->beagle2-----dash-----: 1e+00 0 1e+00 0 2 ( 20) 200 ( 0) 0 200 --->plink-------germline1: 1e+00 0 1e+00 0 16.4 ( 17.1) 0 ( 0) 12 0 --->plink-------germline2: 1e+00 0 1e+00 0 16.4 ( 17.1) 0 ( 0) 12 0 --->plink-------dash-----: 1e+00 0 1e+00 0 16.4 ( 17.1) 200 ( 0) 12 200 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0 1e+00 0 0 ( 0) 200 ( 0) 0 200 --->germline2---dash-----: 1e+00 0 1e+00 0 0 ( 0) 200 ( 0) 0 200 ######truePSnps###### --->fabia-------beagle1--: 1e+00 0 1e+00 0 134 ( 27.2) 200 ( 0) 136 200 --->fabia-------beagle2--: 7.01e-17 -63.5 6.29e-35 -64 134 ( 27.2) 198 ( 20) 136 200 --->fabia-------plink----: 5.76e-18 -48 2.41e-33 -49.6 134 ( 27.2) 184 ( 17.1) 136 188 --->fabia-------germline1: 1e+00 0 1e+00 0 134 ( 27.2) 200 ( 0) 136 200 --->fabia-------germline2: 1e+00 0 1e+00 0 134 ( 27.2) 200 ( 0) 136 200 --->fabia-------dash-----: 1e+00 0 1e+00 0 134 ( 27.2) 0 ( 0) 136 0 --->beagle1-----beagle2--: 1e+00 0 1e+00 0 200 ( 0) 198 ( 20) 200 200 --->beagle1-----plink----: 1e+00 0 1e+00 0 200 ( 0) 184 ( 17.1) 200 188 --->beagle1-----germline1: 1e+00 0 1e+00 0 200 ( 0) 200 ( 0) 200 200 --->beagle1-----germline2: 1e+00 0 1e+00 0 200 ( 0) 200 ( 0) 200 200 --->beagle1-----dash-----: 1e+00 0 1e+00 0 200 ( 0) 0 ( 0) 200 0 --->beagle2-----plink----: 3.21e-12 21 5.56e-07 14.4 198 ( 20) 184 ( 17.1) 200 188 --->beagle2-----germline1: 1e+00 0 1e+00 0 198 ( 20) 200 ( 0) 200 200 --->beagle2-----germline2: 1e+00 0 1e+00 0 198 ( 20) 200 ( 0) 200 200 --->beagle2-----dash-----: 1e+00 0 1e+00 0 198 ( 20) 0 ( 0) 200 0 --->plink-------germline1: 1e+00 0 1e+00 0 184 ( 17.1) 200 ( 0) 188 200 --->plink-------germline2: 1e+00 0 1e+00 0 184 ( 17.1) 200 ( 0) 188 200 --->plink-------dash-----: 1e+00 0 1e+00 0 184 ( 17.1) 0 ( 0) 188 0 --->germline1---germline2: 1e+00 0 1e+00 0 200 ( 0) 200 ( 0) 200 200 --->germline1---dash-----: 1e+00 0 1e+00 0 200 ( 0) 0 ( 0) 200 0 --->germline2---dash-----: 1e+00 0 1e+00 0 200 ( 0) 0 ( 0) 200 0 ######MatthewsSample###### --->fabia-------beagle1--: 3.84e-18 0.494685 1.59e-69 0.492703 0.992672 (0.035032) 0.499969 (0.101191) 1.000000 0.497423 --->fabia-------beagle2--: 1e+00 0.000000 4.27e-04 0.047085 0.992672 (0.035032) 0.945587 (0.127613) 1.000000 1.000000 --->fabia-------plink----: 5.61e-18 0.460031 1.41e-66 0.450608 0.992672 (0.035032) 0.542064 (0.097444) 1.000000 0.539240 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.992672 (0.035032) 0.000000 (0.000000) 1.000000 0.000000 --->fabia-------germline2: 1e+00 0.000000 1e+00 0.000000 0.992672 (0.035032) 0.000000 (0.000000) 1.000000 0.000000 --->fabia-------dash-----: 4.4e-21 0.886853 2.49e-140 0.881262 0.992672 (0.035032) 0.111411 (0.005418) 1.000000 0.113208 --->beagle1-----beagle2--: 3.89e-18 -0.455794 9.36e-63 -0.445618 0.499969 (0.101191) 0.945587 (0.127613) 0.497423 1.000000 --->beagle1-----plink----: 4.65e-03 -0.041237 4.57e-03 -0.042095 0.499969 (0.101191) 0.542064 (0.097444) 0.497423 0.539240 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.499969 (0.101191) 0.000000 (0.000000) 0.497423 0.000000 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 0.499969 (0.101191) 0.000000 (0.000000) 0.497423 0.000000 --->beagle1-----dash-----: 3.94e-18 0.387525 2.67e-61 0.388559 0.499969 (0.101191) 0.111411 (0.005418) 0.497423 0.113208 --->beagle2-----plink----: 5.61e-17 0.422215 1.14e-45 0.403523 0.945587 (0.127613) 0.542064 (0.097444) 1.000000 0.539240 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.945587 (0.127613) 0.000000 (0.000000) 1.000000 0.000000 --->beagle2-----germline2: 1e+00 0.000000 1e+00 0.000000 0.945587 (0.127613) 0.000000 (0.000000) 1.000000 0.000000 --->beagle2-----dash-----: 2.49e-19 0.849770 2.14e-83 0.834176 0.945587 (0.127613) 0.111411 (0.005418) 1.000000 0.113208 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.542064 (0.097444) 0.000000 (0.000000) 0.539240 0.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 0.542064 (0.097444) 0.000000 (0.000000) 0.539240 0.000000 --->plink-------dash-----: 3.81e-18 0.426091 1.32e-67 0.430654 0.542064 (0.097444) 0.111411 (0.005418) 0.539240 0.113208 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.111411 (0.005418) 0.000000 0.113208 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.111411 (0.005418) 0.000000 0.113208 ######F1Sample###### --->fabia-------beagle1--: 3.83e-18 0.537840 1.86e-72 0.532854 0.992261 (0.038151) 0.459407 (0.101319) 1.000000 0.449495 --->fabia-------beagle2--: 1e+00 0.000000 4.21e-04 0.046058 0.992261 (0.038151) 0.946203 (0.123894) 1.000000 1.000000 --->fabia-------plink----: 5.58e-18 0.499153 4.21e-65 0.488960 0.992261 (0.038151) 0.503301 (0.109883) 1.000000 0.500000 --->fabia-------germline1: 4.4e-21 0.886830 1.07e-136 0.880851 0.992261 (0.038151) 0.111411 (0.005418) 1.000000 0.113208 --->fabia-------germline2: 4.4e-21 0.886830 1.07e-136 0.880851 0.992261 (0.038151) 0.111411 (0.005418) 1.000000 0.113208 --->fabia-------dash-----: 4.4e-21 0.940037 1.93e-139 0.933261 0.992261 (0.038151) 0.059000 (0.003015) 1.000000 0.060000 --->beagle1-----beagle2--: 5.69e-18 -0.499534 4.39e-63 -0.486796 0.459407 (0.101319) 0.946203 (0.123894) 0.449495 1.000000 --->beagle1-----plink----: 5.2e-03 -0.045754 5.57e-03 -0.043894 0.459407 (0.101319) 0.503301 (0.109883) 0.449495 0.500000 --->beagle1-----germline1: 3.93e-18 0.343650 6.41e-57 0.347997 0.459407 (0.101319) 0.111411 (0.005418) 0.449495 0.113208 --->beagle1-----germline2: 3.93e-18 0.343650 6.41e-57 0.347997 0.459407 (0.101319) 0.111411 (0.005418) 0.449495 0.113208 --->beagle1-----dash-----: 3.93e-18 0.394945 1.65e-62 0.400407 0.459407 (0.101319) 0.059000 (0.003015) 0.449495 0.060000 --->beagle2-----plink----: 2.28e-17 0.464306 4.38e-48 0.442902 0.946203 (0.123894) 0.503301 (0.109883) 1.000000 0.500000 --->beagle2-----germline1: 2.49e-19 0.850311 1.11e-84 0.834793 0.946203 (0.123894) 0.111411 (0.005418) 1.000000 0.113208 --->beagle2-----germline2: 2.49e-19 0.850311 1.11e-84 0.834793 0.946203 (0.123894) 0.111411 (0.005418) 1.000000 0.113208 --->beagle2-----dash-----: 2.49e-19 0.899496 3.46e-87 0.887203 0.946203 (0.123894) 0.059000 (0.003015) 1.000000 0.060000 --->plink-------germline1: 3.81e-18 0.386837 6.83e-59 0.391891 0.503301 (0.109883) 0.111411 (0.005418) 0.500000 0.113208 --->plink-------germline2: 3.81e-18 0.386837 6.83e-59 0.391891 0.503301 (0.109883) 0.111411 (0.005418) 0.500000 0.113208 --->plink-------dash-----: 3.81e-18 0.439973 1.06e-63 0.444301 0.503301 (0.109883) 0.059000 (0.003015) 0.500000 0.060000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.111411 (0.005418) 0.111411 (0.005418) 0.113208 0.113208 --->germline1---dash-----: 9.32e-22 0.053208 1.3e-134 0.052411 0.111411 (0.005418) 0.059000 (0.003015) 0.113208 0.060000 --->germline2---dash-----: 9.32e-22 0.053208 1.3e-134 0.052411 0.111411 (0.005418) 0.059000 (0.003015) 0.113208 0.060000 ######accuracySample###### --->fabia-------beagle1--: 3.79e-18 0.144999 9.12e-53 0.144100 0.999600 (0.001837) 0.855500 (0.046610) 1.000000 0.855000 --->fabia-------beagle2--: 1e+00 0.000000 2.42e-05 0.006000 0.999600 (0.001837) 0.993600 (0.013597) 1.000000 1.000000 --->fabia-------plink----: 5.57e-18 0.124956 5.04e-46 0.125600 0.999600 (0.001837) 0.874000 (0.048305) 1.000000 0.880000 --->fabia-------germline1: 4.39e-21 0.940023 1.6e-242 0.940600 0.999600 (0.001837) 0.059000 (0.003015) 1.000000 0.060000 --->fabia-------germline2: 4.39e-21 0.940023 1.6e-242 0.940600 0.999600 (0.001837) 0.059000 (0.003015) 1.000000 0.060000 --->fabia-------dash-----: 1e+00 0.000000 1.58e-04 -0.001464 0.999600 (0.001837) 1.001064 (0.003207) 1.000000 1.000000 --->beagle1-----beagle2--: 3.77e-18 -0.139998 3.04e-51 -0.138100 0.855500 (0.046610) 0.993600 (0.013597) 0.855000 1.000000 --->beagle1-----plink----: 9.68e-03 -0.020037 9.83e-03 -0.018500 0.855500 (0.046610) 0.874000 (0.048305) 0.855000 0.880000 --->beagle1-----germline1: 3.8e-18 0.795018 4.97e-124 0.796500 0.855500 (0.046610) 0.059000 (0.003015) 0.855000 0.060000 --->beagle1-----germline2: 3.8e-18 0.795018 4.97e-124 0.796500 0.855500 (0.046610) 0.059000 (0.003015) 0.855000 0.060000 --->beagle1-----dash-----: 3.8e-18 -0.145057 5.37e-53 -0.145564 0.855500 (0.046610) 1.001064 (0.003207) 0.855000 1.000000 --->beagle2-----plink----: 5.5e-18 0.119961 6.3e-43 0.119600 0.993600 (0.013597) 0.874000 (0.048305) 1.000000 0.880000 --->beagle2-----germline1: 2.33e-19 0.939957 6.01e-184 0.934600 0.993600 (0.013597) 0.059000 (0.003015) 1.000000 0.060000 --->beagle2-----germline2: 2.33e-19 0.939957 6.01e-184 0.934600 0.993600 (0.013597) 0.059000 (0.003015) 1.000000 0.060000 --->beagle2-----dash-----: 1e+00 0.000000 1.02e-06 -0.007464 0.993600 (0.013597) 1.001064 (0.003207) 1.000000 1.000000 --->plink-------germline1: 3.81e-18 0.815055 3.4e-124 0.815000 0.874000 (0.048305) 0.059000 (0.003015) 0.880000 0.060000 --->plink-------germline2: 3.81e-18 0.815055 3.4e-124 0.815000 0.874000 (0.048305) 0.059000 (0.003015) 0.880000 0.060000 --->plink-------dash-----: 5.57e-18 -0.125060 8.92e-46 -0.127064 0.874000 (0.048305) 1.001064 (0.003207) 0.880000 1.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.059000 (0.003015) 0.059000 (0.003015) 0.060000 0.060000 --->germline1---dash-----: 9.32e-22 -0.940000 7.17e-218 -0.942064 0.059000 (0.003015) 1.001064 (0.003207) 0.060000 1.000000 --->germline2---dash-----: 9.32e-22 -0.940000 7.17e-218 -0.942064 0.059000 (0.003015) 1.001064 (0.003207) 0.060000 1.000000 ######FPRSample###### --->fabia-------beagle1--: 3.75e-18 -0.154214 1.04e-52 -0.152714 5.15e-05 (0.000515) 0.152766 (0.049264) 0.000000 0.148936 --->fabia-------beagle2--: 1e+00 0.000000 4.18e-04 -0.003778 5.15e-05 (0.000515) 0.003830 (0.010313) 0.000000 0.000000 --->fabia-------plink----: 5.53e-18 -0.133007 3.93e-46 -0.133991 5.15e-05 (0.000515) 0.134043 (0.051388) 0.000000 0.127660 --->fabia-------germline1: 1.3e-21 -1.000017 3.36e-248 -1.001012 5.15e-05 (0.000515) 1.001064 (0.003207) 0.000000 1.000000 --->fabia-------germline2: 1.3e-21 -1.000017 3.36e-248 -1.001012 5.15e-05 (0.000515) 1.001064 (0.003207) 0.000000 1.000000 --->fabia-------dash-----: 1.3e-21 -0.940037 4.09e-248 -0.940948 5.15e-05 (0.000515) 0.941000 (0.003015) 0.000000 0.940000 --->beagle1-----beagle2--: 3.8e-18 0.148907 6.22e-52 0.148936 0.152766 (0.049264) 0.003830 (0.010313) 0.148936 0.000000 --->beagle1-----plink----: 1.58e-02 0.021343 1.4e-02 0.018723 0.152766 (0.049264) 0.134043 (0.051388) 0.148936 0.127660 --->beagle1-----germline1: 3.79e-18 -0.851051 2.26e-124 -0.848298 0.152766 (0.049264) 1.001064 (0.003207) 0.148936 1.000000 --->beagle1-----germline2: 3.79e-18 -0.851051 2.26e-124 -0.848298 0.152766 (0.049264) 1.001064 (0.003207) 0.148936 1.000000 --->beagle1-----dash-----: 3.79e-18 -0.790721 3.08e-121 -0.788234 0.152766 (0.049264) 0.941000 (0.003015) 0.148936 0.940000 --->beagle2-----plink----: 5.59e-18 -0.127675 1.23e-44 -0.130213 0.003830 (0.010313) 0.134043 (0.051388) 0.000000 0.127660 --->beagle2-----germline1: 1.26e-20 -0.999993 1.71e-199 -0.997234 0.003830 (0.010313) 1.001064 (0.003207) 0.000000 1.000000 --->beagle2-----germline2: 1.26e-20 -0.999993 1.71e-199 -0.997234 0.003830 (0.010313) 1.001064 (0.003207) 0.000000 1.000000 --->beagle2-----dash-----: 1.26e-20 -0.939938 6.86e-197 -0.937170 0.003830 (0.010313) 0.941000 (0.003015) 0.000000 0.940000 --->plink-------germline1: 3.81e-18 -0.867058 3.4e-124 -0.867021 0.134043 (0.051388) 1.001064 (0.003207) 0.127660 1.000000 --->plink-------germline2: 3.81e-18 -0.867058 3.4e-124 -0.867021 0.134043 (0.051388) 1.001064 (0.003207) 0.127660 1.000000 --->plink-------dash-----: 3.81e-18 -0.807057 4.34e-121 -0.806957 0.134043 (0.051388) 0.941000 (0.003015) 0.127660 0.940000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 1.001064 (0.003207) 1.001064 (0.003207) 1.000000 1.000000 --->germline1---dash-----: 9.32e-22 0.060000 5.4e-249 0.060064 1.001064 (0.003207) 0.941000 (0.003015) 1.000000 0.940000 --->germline2---dash-----: 9.32e-22 0.060000 5.4e-249 0.060064 1.001064 (0.003207) 0.941000 (0.003015) 1.000000 0.940000 ######FDRSample###### --->fabia-------beagle1--: 3.8e-18 -0.702892 3.67e-89 -0.694176 0.001429 (0.014286) 0.695605 (0.089195) 0.000000 0.710084 --->fabia-------beagle2--: 1e+00 0.000000 1.04e-03 -0.049538 0.001429 (0.014286) 0.050966 (0.145394) 0.000000 0.000000 --->fabia-------plink----: 5.56e-18 -0.665636 1.99e-78 -0.654318 0.001429 (0.014286) 0.655746 (0.111528) 0.000000 0.666667 --->fabia-------germline1: 1.3e-21 -0.940003 8.38e-181 -0.939571 0.001429 (0.014286) 0.941000 (0.003015) 0.000000 0.940000 --->fabia-------germline2: 1.3e-21 -0.940003 8.38e-181 -0.939571 0.001429 (0.014286) 0.941000 (0.003015) 0.000000 0.940000 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.001429 (0.014286) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----beagle2--: 5.63e-18 0.674638 8.32e-68 0.644639 0.695605 (0.089195) 0.050966 (0.145394) 0.710084 0.000000 --->beagle1-----plink----: 5.29e-03 0.040092 9.25e-03 0.039859 0.695605 (0.089195) 0.655746 (0.111528) 0.710084 0.666667 --->beagle1-----germline1: 3.93e-18 -0.238535 2.98e-48 -0.245395 0.695605 (0.089195) 0.941000 (0.003015) 0.710084 0.940000 --->beagle1-----germline2: 3.93e-18 -0.238535 2.98e-48 -0.245395 0.695605 (0.089195) 0.941000 (0.003015) 0.710084 0.940000 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.695605 (0.089195) 0.000000 (0.000000) 0.710084 0.000000 --->beagle2-----plink----: 6.15e-18 -0.633315 1.23e-57 -0.604780 0.050966 (0.145394) 0.655746 (0.111528) 0.000000 0.666667 --->beagle2-----germline1: 1.31e-20 -0.939981 1.12e-80 -0.890034 0.050966 (0.145394) 0.941000 (0.003015) 0.000000 0.940000 --->beagle2-----germline2: 1.31e-20 -0.939981 1.12e-80 -0.890034 0.050966 (0.145394) 0.941000 (0.003015) 0.000000 0.940000 --->beagle2-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.050966 (0.145394) 0.000000 (0.000000) 0.000000 0.000000 --->plink-------germline1: 3.81e-18 -0.274363 1.11e-45 -0.285254 0.655746 (0.111528) 0.941000 (0.003015) 0.666667 0.940000 --->plink-------germline2: 3.81e-18 -0.274363 1.11e-45 -0.285254 0.655746 (0.111528) 0.941000 (0.003015) 0.666667 0.940000 --->plink-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.655746 (0.111528) 0.000000 (0.000000) 0.666667 0.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.941000 (0.003015) 0.941000 (0.003015) 0.940000 0.940000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.941000 (0.003015) 0.000000 (0.000000) 0.940000 0.000000 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 0.941000 (0.003015) 0.000000 (0.000000) 0.940000 0.000000 ######specifitySample###### --->fabia-------beagle1--: 3.75e-18 0.148968 2.4e-52 0.151651 0.999948 (0.000515) 0.848298 (0.049383) 1.000000 0.851064 --->fabia-------beagle2--: 1e+00 0.000000 8.62e-03 0.002714 0.999948 (0.000515) 0.997234 (0.010100) 1.000000 1.000000 --->fabia-------plink----: 5.54e-18 0.132955 2.37e-46 0.132927 0.999948 (0.000515) 0.867021 (0.050682) 1.000000 0.872340 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.999948 (0.000515) 0.000000 (0.000000) 1.000000 0.000000 --->fabia-------germline2: 1e+00 0.000000 1e+00 0.000000 0.999948 (0.000515) 0.000000 (0.000000) 1.000000 0.000000 --->fabia-------dash-----: 1e+00 0.000000 1.32e-03 0.016615 0.999948 (0.000515) 0.983333 (0.050252) 1.000000 1.000000 --->beagle1-----beagle2--: 3.79e-18 -0.148914 6.22e-52 -0.148936 0.848298 (0.049383) 0.997234 (0.010100) 0.851064 1.000000 --->beagle1-----plink----: 1.51e-02 -0.021293 1.4e-02 -0.018723 0.848298 (0.049383) 0.867021 (0.050682) 0.851064 0.872340 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.848298 (0.049383) 0.000000 (0.000000) 0.851064 0.000000 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 0.848298 (0.049383) 0.000000 (0.000000) 0.851064 0.000000 --->beagle1-----dash-----: 2.28e-17 -0.143669 5.83e-34 -0.135035 0.848298 (0.049383) 0.983333 (0.050252) 0.851064 1.000000 --->beagle2-----plink----: 5.57e-18 0.127684 1.23e-44 0.130213 0.997234 (0.010100) 0.867021 (0.050682) 1.000000 0.872340 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.997234 (0.010100) 0.000000 (0.000000) 1.000000 0.000000 --->beagle2-----germline2: 1e+00 0.000000 1e+00 0.000000 0.997234 (0.010100) 0.000000 (0.000000) 1.000000 0.000000 --->beagle2-----dash-----: 1e+00 0.000000 8.99e-03 0.013901 0.997234 (0.010100) 0.983333 (0.050252) 1.000000 1.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.867021 (0.050682) 0.000000 (0.000000) 0.872340 0.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 0.867021 (0.050682) 0.000000 (0.000000) 0.872340 0.000000 --->plink-------dash-----: 3.41e-17 -0.122340 3.52e-33 -0.116312 0.867021 (0.050682) 0.983333 (0.050252) 0.872340 1.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.983333 (0.050252) 0.000000 1.000000 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.983333 (0.050252) 0.000000 1.000000 ######sensitivitySample###### --->fabia-------beagle1--: 1e+00 0.000000 1.16e-01 0.020000 0.988333 (0.059246) 0.968333 (0.112853) 1.000000 1.000000 --->fabia-------beagle2--: 1e+00 0.000000 2.9e-04 0.051667 0.988333 (0.059246) 0.936667 (0.129273) 1.000000 1.000000 --->fabia-------plink----: 1e+00 0.000000 5.15e-01 0.005000 0.988333 (0.059246) 0.983333 (0.050252) 1.000000 1.000000 --->fabia-------germline1: 1e+00 0.000000 5.15e-01 0.005000 0.988333 (0.059246) 0.983333 (0.050252) 1.000000 1.000000 --->fabia-------germline2: 1e+00 0.000000 5.15e-01 0.005000 0.988333 (0.059246) 0.983333 (0.050252) 1.000000 1.000000 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.988333 (0.059246) 0.000000 (0.000000) 1.000000 0.000000 --->beagle1-----beagle2--: 1e+00 0.000000 4.11e-05 0.031667 0.968333 (0.112853) 0.936667 (0.129273) 1.000000 1.000000 --->beagle1-----plink----: 1e+00 0.000000 1.5e-01 -0.015000 0.968333 (0.112853) 0.983333 (0.050252) 1.000000 1.000000 --->beagle1-----germline1: 1e+00 0.000000 1.5e-01 -0.015000 0.968333 (0.112853) 0.983333 (0.050252) 1.000000 1.000000 --->beagle1-----germline2: 1e+00 0.000000 1.5e-01 -0.015000 0.968333 (0.112853) 0.983333 (0.050252) 1.000000 1.000000 --->beagle1-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.968333 (0.112853) 0.000000 (0.000000) 1.000000 0.000000 --->beagle2-----plink----: 1e+00 0.000000 2.63e-04 -0.046667 0.936667 (0.129273) 0.983333 (0.050252) 1.000000 1.000000 --->beagle2-----germline1: 1e+00 0.000000 2.63e-04 -0.046667 0.936667 (0.129273) 0.983333 (0.050252) 1.000000 1.000000 --->beagle2-----germline2: 1e+00 0.000000 2.63e-04 -0.046667 0.936667 (0.129273) 0.983333 (0.050252) 1.000000 1.000000 --->beagle2-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.936667 (0.129273) 0.000000 (0.000000) 1.000000 0.000000 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.983333 (0.050252) 0.983333 (0.050252) 1.000000 1.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 0.983333 (0.050252) 0.983333 (0.050252) 1.000000 1.000000 --->plink-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.983333 (0.050252) 0.000000 (0.000000) 1.000000 0.000000 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.983333 (0.050252) 0.983333 (0.050252) 1.000000 1.000000 --->germline1---dash-----: 1e+00 0.000000 1e+00 0.000000 0.983333 (0.050252) 0.000000 (0.000000) 1.000000 0.000000 --->germline2---dash-----: 1e+00 0.000000 1e+00 0.000000 0.983333 (0.050252) 0.000000 (0.000000) 1.000000 0.000000 ######trueNSample###### --->fabia-------beagle1--: 3.75e-18 114 1.16e-139 114 194 ( 0.1) 79.7 ( 4.64) 194 80 --->fabia-------beagle2--: 1.61e-20 100 5.1e-202 100 194 ( 0.1) 93.7 ( 0.949) 194 94 --->fabia-------plink----: 3.78e-18 112 5.35e-138 112 194 ( 0.1) 81.5 ( 4.76) 194 82 --->fabia-------germline1: 1e+00 0 1e+00 0 194 ( 0.1) 0 ( 0) 194 0 --->fabia-------germline2: 1e+00 0 1e+00 0 194 ( 0.1) 0 ( 0) 194 0 --->fabia-------dash-----: 1.29e-21 100 9.86e-250 99.9 194 ( 0.1) 94.1 ( 0.302) 194 94 --->beagle1-----beagle2--: 3.76e-18 -14 6.22e-52 -14 79.7 ( 4.64) 93.7 ( 0.949) 80 94 --->beagle1-----plink----: 1.35e-02 -2 1.4e-02 -1.76 79.7 ( 4.64) 81.5 ( 4.76) 80 82 --->beagle1-----germline1: 1e+00 0 1e+00 0 79.7 ( 4.64) 0 ( 0) 80 0 --->beagle1-----germline2: 1e+00 0 1e+00 0 79.7 ( 4.64) 0 ( 0) 80 0 --->beagle1-----dash-----: 3.75e-18 -14.5 8.78e-53 -14.4 79.7 ( 4.64) 94.1 ( 0.302) 80 94 --->beagle2-----plink----: 5.53e-18 12 1.23e-44 12.2 93.7 ( 0.949) 81.5 ( 4.76) 94 82 --->beagle2-----germline1: 1e+00 0 1e+00 0 93.7 ( 0.949) 0 ( 0) 94 0 --->beagle2-----germline2: 1e+00 0 1e+00 0 93.7 ( 0.949) 0 ( 0) 94 0 --->beagle2-----dash-----: 1e+00 0 3.38e-04 -0.36 93.7 ( 0.949) 94.1 ( 0.302) 94 94 --->plink-------germline1: 1e+00 0 1e+00 0 81.5 ( 4.76) 0 ( 0) 82 0 --->plink-------germline2: 1e+00 0 1e+00 0 81.5 ( 4.76) 0 ( 0) 82 0 --->plink-------dash-----: 5.52e-18 -12.5 3.75e-46 -12.6 81.5 ( 4.76) 94.1 ( 0.302) 82 94 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0 1e+00 0 0 ( 0) 94.1 ( 0.302) 0 94 --->germline2---dash-----: 1e+00 0 1e+00 0 0 ( 0) 94.1 ( 0.302) 0 94 ######falsePSample###### --->fabia-------beagle1--: 3.75e-18 -14.5 1.25e-52 -14.3 0.01 ( 0.1) 14.4 ( 4.63) 0 14 --->fabia-------beagle2--: 1e+00 0.000000 5.39e-04 -0.350000 0.010000 (0.100000) 0.360000 (0.969432) 0.000000 0.000000 --->fabia-------plink----: 5.52e-18 -12.5 4.18e-46 -12.6 0.01 ( 0.1) 12.6 ( 4.83) 0 12 --->fabia-------germline1: 1.3e-21 -94 2.67e-246 -94.1 0.01 ( 0.1) 94.1 ( 0.302) 0 94 --->fabia-------germline2: 1.3e-21 -94 2.67e-246 -94.1 0.01 ( 0.1) 94.1 ( 0.302) 0 94 --->fabia-------dash-----: 1e+00 0.000000 1e+00 0.000000 0.010000 (0.100000) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----beagle2--: 3.76e-18 14 6.22e-52 14 14.4 ( 4.63) 0.36 ( 0.969) 14 0 --->beagle1-----plink----: 1.35e-02 2 1.4e-02 1.76 14.4 ( 4.63) 12.6 ( 4.83) 14 12 --->beagle1-----germline1: 3.75e-18 -80 2.26e-124 -79.7 14.4 ( 4.63) 94.1 ( 0.302) 14 94 --->beagle1-----germline2: 3.75e-18 -80 2.26e-124 -79.7 14.4 ( 4.63) 94.1 ( 0.302) 14 94 --->beagle1-----dash-----: 1e+00 0 1e+00 0 14.4 ( 4.63) 0 ( 0) 14 0 --->beagle2-----plink----: 5.53e-18 -12 1.23e-44 -12.2 0.36 ( 0.969) 12.6 ( 4.83) 0 12 --->beagle2-----germline1: 1.26e-20 -94 1.71e-199 -93.7 0.36 ( 0.969) 94.1 ( 0.302) 0 94 --->beagle2-----germline2: 1.26e-20 -94 1.71e-199 -93.7 0.36 ( 0.969) 94.1 ( 0.302) 0 94 --->beagle2-----dash-----: 1e+00 0.000000 1e+00 0.000000 0.360000 (0.969432) 0.000000 (0.000000) 0.000000 0.000000 --->plink-------germline1: 3.78e-18 -81.5 3.4e-124 -81.5 12.6 ( 4.83) 94.1 ( 0.302) 12 94 --->plink-------germline2: 3.78e-18 -81.5 3.4e-124 -81.5 12.6 ( 4.83) 94.1 ( 0.302) 12 94 --->plink-------dash-----: 1e+00 0 1e+00 0 12.6 ( 4.83) 0 ( 0) 12 0 --->germline1---germline2: 1e+00 0 1e+00 0 94.1 ( 0.302) 94.1 ( 0.302) 94 94 --->germline1---dash-----: 1e+00 0 1e+00 0 94.1 ( 0.302) 0 ( 0) 94 0 --->germline2---dash-----: 1e+00 0 1e+00 0 94.1 ( 0.302) 0 ( 0) 94 0 ######falseNSample###### --->fabia-------beagle1--: 1e+00 0.000000 7.79e-01 -0.020000 0.070000 (0.355477) 0.090000 (0.621094) 0.000000 0.000000 --->fabia-------beagle2--: 1e+00 0.000000 9.6e-03 -0.210000 0.070000 (0.355477) 0.280000 (0.739642) 0.000000 0.000000 --->fabia-------plink----: 1e+00 0.000000 1e+00 0.000000 0.070000 (0.355477) 0.000000 (0.000000) 0.000000 0.000000 --->fabia-------germline1: 1e+00 0.000000 1e+00 0.000000 0.070000 (0.355477) 0.000000 (0.000000) 0.000000 0.000000 --->fabia-------germline2: 1e+00 0.000000 1e+00 0.000000 0.070000 (0.355477) 0.000000 (0.000000) 0.000000 0.000000 --->fabia-------dash-----: 3.26e-21 -6 3.32e-110 -5.83 0.07 ( 0.355) 5.9 ( 0.302) 0 6 --->beagle1-----beagle2--: 1e+00 0.000000 4.11e-05 -0.190000 0.090000 (0.621094) 0.280000 (0.739642) 0.000000 0.000000 --->beagle1-----plink----: 1e+00 0.000000 1e+00 0.000000 0.090000 (0.621094) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----germline1: 1e+00 0.000000 1e+00 0.000000 0.090000 (0.621094) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----germline2: 1e+00 0.000000 1e+00 0.000000 0.090000 (0.621094) 0.000000 (0.000000) 0.000000 0.000000 --->beagle1-----dash-----: 3.93e-21 -6 9.66e-95 -5.81 0.09 ( 0.621) 5.9 ( 0.302) 0 6 --->beagle2-----plink----: 1e+00 0.000000 1e+00 0.000000 0.280000 (0.739642) 0.000000 (0.000000) 0.000000 0.000000 --->beagle2-----germline1: 1e+00 0.000000 1e+00 0.000000 0.280000 (0.739642) 0.000000 (0.000000) 0.000000 0.000000 --->beagle2-----germline2: 1e+00 0.000000 1e+00 0.000000 0.280000 (0.739642) 0.000000 (0.000000) 0.000000 0.000000 --->beagle2-----dash-----: 1.29e-19 -6 1.39e-87 -5.62 0.28 ( 0.74) 5.9 ( 0.302) 0 6 --->plink-------germline1: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->plink-------germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->plink-------dash-----: 1e+00 0 1e+00 0 0 ( 0) 5.9 ( 0.302) 0 6 --->germline1---germline2: 1e+00 0.000000 1e+00 0.000000 0.000000 (0.000000) 0.000000 (0.000000) 0.000000 0.000000 --->germline1---dash-----: 1e+00 0 1e+00 0 0 ( 0) 5.9 ( 0.302) 0 6 --->germline2---dash-----: 1e+00 0 1e+00 0 0 ( 0) 5.9 ( 0.302) 0 6 ######truePSample###### --->fabia-------beagle1--: 1e+00 0 1.16e-01 0.12 5.93 ( 0.355) 5.81 ( 0.677) 6 6 --->fabia-------beagle2--: 1e+00 0 2.9e-04 0.31 5.93 ( 0.355) 5.62 ( 0.776) 6 6 --->fabia-------plink----: 1e+00 0 5.15e-01 0.03 5.93 ( 0.355) 5.9 ( 0.302) 6 6 --->fabia-------germline1: 1e+00 0 5.15e-01 0.03 5.93 ( 0.355) 5.9 ( 0.302) 6 6 --->fabia-------germline2: 1e+00 0 5.15e-01 0.03 5.93 ( 0.355) 5.9 ( 0.302) 6 6 --->fabia-------dash-----: 3.88e-18 -656 1.64e-192 -656 5.93 ( 0.355) 662 ( 7.72) 6 662 --->beagle1-----beagle2--: 1e+00 0 4.11e-05 0.19 5.81 ( 0.677) 5.62 ( 0.776) 6 6 --->beagle1-----plink----: 1e+00 0 1.5e-01 -0.09 5.81 ( 0.677) 5.9 ( 0.302) 6 6 --->beagle1-----germline1: 1e+00 0 1.5e-01 -0.09 5.81 ( 0.677) 5.9 ( 0.302) 6 6 --->beagle1-----germline2: 1e+00 0 1.5e-01 -0.09 5.81 ( 0.677) 5.9 ( 0.302) 6 6 --->beagle1-----dash-----: 3.88e-18 -656 1.77e-192 -656 5.81 ( 0.677) 662 ( 7.72) 6 662 --->beagle2-----plink----: 1e+00 0 2.63e-04 -0.28 5.62 ( 0.776) 5.9 ( 0.302) 6 6 --->beagle2-----germline1: 1e+00 0 2.63e-04 -0.28 5.62 ( 0.776) 5.9 ( 0.302) 6 6 --->beagle2-----germline2: 1e+00 0 2.63e-04 -0.28 5.62 ( 0.776) 5.9 ( 0.302) 6 6 --->beagle2-----dash-----: 3.89e-18 -656 4.22e-192 -656 5.62 ( 0.776) 662 ( 7.72) 6 662 --->plink-------germline1: 1e+00 0 1e+00 0 5.9 ( 0.302) 5.9 ( 0.302) 6 6 --->plink-------germline2: 1e+00 0 1e+00 0 5.9 ( 0.302) 5.9 ( 0.302) 6 6 --->plink-------dash-----: 3.87e-18 -656 5.84e-193 -656 5.9 ( 0.302) 662 ( 7.72) 6 662 --->germline1---germline2: 1e+00 0 1e+00 0 5.9 ( 0.302) 5.9 ( 0.302) 6 6 --->germline1---dash-----: 3.87e-18 -656 5.84e-193 -656 5.9 ( 0.302) 662 ( 7.72) 6 662 --->germline2---dash-----: 3.87e-18 -656 5.84e-193 -656 5.9 ( 0.302) 662 ( 7.72) 6 662