Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:41 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim51beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim51beagle.txt) Running time for phasing: 23 minutes 52 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:14 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim52beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim52beagle.txt) Running time for phasing: 31 minutes 57 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:04 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim53beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim53beagle.txt) Running time for phasing: 19 minutes 2 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:33 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim54beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim54beagle.txt) Running time for phasing: 14 minutes 11 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:58 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim55beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim55beagle.txt) Running time for phasing: 20 minutes 32 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:15 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim56beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim56beagle.txt) Running time for phasing: 15 minutes 19 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:42 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim57beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim57beagle.txt) Running time for phasing: 14 minutes 17 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:07 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim58beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim58beagle.txt) Running time for phasing: 17 minutes 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:38 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim59beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim59beagle.txt) Running time for phasing: 14 minutes 33 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:03 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim60beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim60beagle.txt) Running time for phasing: 15 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:30 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim61beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim61beagle.txt) Running time for phasing: 15 minutes 23 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:58 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim62beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim62beagle.txt) Running time for phasing: 14 minutes 49 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:25 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim63beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim63beagle.txt) Running time for phasing: 14 minutes 17 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:52 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim64beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim64beagle.txt) Running time for phasing: 18 minutes 58 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:22 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim65beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim65beagle.txt) Running time for phasing: 14 minutes 33 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:47 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim66beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim66beagle.txt) Running time for phasing: 15 minutes 0 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:14 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim67beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim67beagle.txt) Running time for phasing: 14 minutes 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:39 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim68beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim68beagle.txt) Running time for phasing: 14 minutes 16 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:05 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim69beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim69beagle.txt) Running time for phasing: 15 minutes 49 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:33 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim70beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim70beagle.txt) Running time for phasing: 15 minutes 20 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:59 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim71beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim71beagle.txt) Running time for phasing: 14 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:25 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim72beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim72beagle.txt) Running time for phasing: 13 minutes 29 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:50 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim73beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim73beagle.txt) Running time for phasing: 13 minutes 51 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:15 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim74beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim74beagle.txt) Running time for phasing: 14 minutes 33 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:43 PM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim75beagle.txt fastibd=true missing=N out=beagleresc.txt number of markers = 10000 number of haplotypes = 2000 (dataSim75beagle.txt) Running time for phasing: 13 minutes 50 seconds Beagle version 3.3.2 (31 Oct 2011) finished