Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:09 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim1beagle.txt) Running time for phasing: 19 minutes 51 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:38 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim2beagle.txt) Running time for phasing: 15 minutes 21 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:10 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim3beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim3beagle.txt) Running time for phasing: 23 minutes 17 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:45 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim4beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim4beagle.txt) Running time for phasing: 14 minutes 15 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:09 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim5beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim5beagle.txt) Running time for phasing: 14 minutes 6 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:35 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim6beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim6beagle.txt) Running time for phasing: 15 minutes 4 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:00 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim7beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim7beagle.txt) Running time for phasing: 15 minutes 58 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:27 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim8beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim8beagle.txt) Running time for phasing: 16 minutes 51 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:55 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim9beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim9beagle.txt) Running time for phasing: 18 minutes 25 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:24 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim10beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim10beagle.txt) Running time for phasing: 13 minutes 34 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:47 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim11beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim11beagle.txt) Running time for phasing: 17 minutes 22 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:16 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim12beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim12beagle.txt) Running time for phasing: 14 minutes 25 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:41 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim13beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim13beagle.txt) Running time for phasing: 31 minutes 3 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:23 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim14beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim14beagle.txt) Running time for phasing: 15 minutes 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:51 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim15beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim15beagle.txt) Running time for phasing: 15 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:17 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim16beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim16beagle.txt) Running time for phasing: 13 minutes 15 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:41 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim17beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim17beagle.txt) Running time for phasing: 14 minutes 27 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:07 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim18beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim18beagle.txt) Running time for phasing: 14 minutes 19 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:31 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim19beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim19beagle.txt) Running time for phasing: 14 minutes 50 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:57 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim20beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim20beagle.txt) Running time for phasing: 14 minutes 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:24 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim21beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim21beagle.txt) Running time for phasing: 17 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:54 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim22beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim22beagle.txt) Running time for phasing: 14 minutes 56 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:20 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim23beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim23beagle.txt) Running time for phasing: 12 minutes 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:44 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim24beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim24beagle.txt) Running time for phasing: 13 minutes 22 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:09 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim25beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim25beagle.txt) Running time for phasing: 13 minutes 13 seconds Beagle version 3.3.2 (31 Oct 2011) finished