Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:46 PM CET on 10 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim26beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim26beagle.txt) Running time for phasing: 31 minutes 35 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:32 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim27beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim27beagle.txt) Running time for phasing: 14 minutes 50 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:56 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim28beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim28beagle.txt) Running time for phasing: 22 minutes 34 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:29 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim29beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim29beagle.txt) Running time for phasing: 16 minutes 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:54 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim30beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim30beagle.txt) Running time for phasing: 14 minutes 35 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:15 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim31beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim31beagle.txt) Running time for phasing: 13 minutes 55 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:38 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim32beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim32beagle.txt) Running time for phasing: 15 minutes 34 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:02 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim33beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim33beagle.txt) Running time for phasing: 15 minutes 25 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:26 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim34beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim34beagle.txt) Running time for phasing: 16 minutes 48 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:52 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim35beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim35beagle.txt) Running time for phasing: 18 minutes 15 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:20 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim36beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim36beagle.txt) Running time for phasing: 15 minutes 17 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:43 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim37beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim37beagle.txt) Running time for phasing: 17 minutes 35 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:11 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim38beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim38beagle.txt) Running time for phasing: 15 minutes 3 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:35 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim39beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim39beagle.txt) Running time for phasing: 18 minutes 30 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:13 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim40beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim40beagle.txt) Running time for phasing: 14 minutes 49 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:34 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim41beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim41beagle.txt) Running time for phasing: 14 minutes 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:57 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim42beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim42beagle.txt) Running time for phasing: 14 minutes 13 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:18 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim43beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim43beagle.txt) Running time for phasing: 13 minutes 26 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:40 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim44beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim44beagle.txt) Running time for phasing: 15 minutes 30 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:04 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim45beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim45beagle.txt) Running time for phasing: 15 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:27 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim46beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim46beagle.txt) Running time for phasing: 15 minutes 5 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:50 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim47beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim47beagle.txt) Running time for phasing: 15 minutes 26 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:14 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim48beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim48beagle.txt) Running time for phasing: 17 minutes 50 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:39 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim49beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim49beagle.txt) Running time for phasing: 14 minutes 45 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 10:03 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim50beagle.txt fastibd=true missing=N out=beagleresb.txt number of markers = 10000 number of haplotypes = 2000 (dataSim50beagle.txt) Running time for phasing: 13 minutes 48 seconds Beagle version 3.3.2 (31 Oct 2011) finished