Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 11:30 PM CET on 10 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim1beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim1beagle.txt) Running time for phasing: 31 minutes 17 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:18 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim2beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim2beagle.txt) Running time for phasing: 14 minutes 31 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 12:40 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim3beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim3beagle.txt) Running time for phasing: 18 minutes 32 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:08 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim4beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim4beagle.txt) Running time for phasing: 21 minutes 3 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 01:39 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim5beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim5beagle.txt) Running time for phasing: 14 minutes 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:02 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim6beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim6beagle.txt) Running time for phasing: 13 minutes 51 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:24 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim7beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim7beagle.txt) Running time for phasing: 14 minutes 59 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 02:47 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim8beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim8beagle.txt) Running time for phasing: 14 minutes 42 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:10 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim9beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim9beagle.txt) Running time for phasing: 15 minutes 17 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:34 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim10beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim10beagle.txt) Running time for phasing: 17 minutes 19 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 03:58 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim11beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim11beagle.txt) Running time for phasing: 19 minutes 8 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:24 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim12beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim12beagle.txt) Running time for phasing: 14 minutes 29 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 04:46 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim13beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim13beagle.txt) Running time for phasing: 16 minutes 33 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:09 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim14beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim14beagle.txt) Running time for phasing: 13 minutes 43 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:31 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim15beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim15beagle.txt) Running time for phasing: 18 minutes 30 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 05:57 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim16beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim16beagle.txt) Running time for phasing: 24 minutes 40 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:30 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim17beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim17beagle.txt) Running time for phasing: 14 minutes 46 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 06:55 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim18beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim18beagle.txt) Running time for phasing: 15 minutes 1 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:17 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim19beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim19beagle.txt) Running time for phasing: 14 minutes 44 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 07:40 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim20beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim20beagle.txt) Running time for phasing: 14 minutes 30 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:03 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim21beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim21beagle.txt) Running time for phasing: 14 minutes 10 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:25 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim22beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim22beagle.txt) Running time for phasing: 14 minutes 11 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 08:48 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim23beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim23beagle.txt) Running time for phasing: 15 minutes 16 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:11 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim24beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim24beagle.txt) Running time for phasing: 16 minutes 52 seconds Beagle version 3.3.2 (31 Oct 2011) finished Beagle version 3.3.2 (31 Oct 2011) Enter "java -jar beagle.jar" for summary of command line arguments. Start time: 09:37 AM CET on 11 Feb 2013 Command line: java -Xmx27159m -jar beagle.jar unphased=dataSim25beagle.txt fastibd=true missing=N out=beagleresa.txt number of markers = 10000 number of haplotypes = 2000 (dataSim25beagle.txt) Running time for phasing: 14 minutes 13 seconds Beagle version 3.3.2 (31 Oct 2011) finished